Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC4.42□□□□□ -1.7
SHMT2P34897 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
SHMT2P34897 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SHMT2P34897 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.42□□□□□ -1.7
SHMT2P34897 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.42□□□□□ -1.7
SHMT2P34897 OR10AB1P-202ENST00000641219 1686 ntBASIC4.41□□□□□ -1.7
SHMT2P34897 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.41□□□□□ -1.7
SHMT2P34897 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.41□□□□□ -1.7
SHMT2P34897 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
SHMT2P34897 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.41□□□□□ -1.7
SHMT2P34897 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC4.41□□□□□ -1.7
SHMT2P34897 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
SHMT2P34897 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.41□□□□□ -1.7
SHMT2P34897 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
SHMT2P34897 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
SHMT2P34897 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
SHMT2P34897 RNU6-891P-201ENST00000384280 111 ntBASIC4.41□□□□□ -1.7
SHMT2P34897 AL035696.2-201ENST00000407941 709 ntBASIC4.41□□□□□ -1.7
SHMT2P34897 AC073136.2-201ENST00000417282 849 ntBASIC4.41□□□□□ -1.7
SHMT2P34897 RFESDP1-201ENST00000422350 461 ntBASIC4.41□□□□□ -1.7
SHMT2P34897 CENPIP1-201ENST00000425713 902 ntBASIC4.41□□□□□ -1.7
SHMT2P34897 DNAJC19P7-201ENST00000428811 344 ntBASIC4.41□□□□□ -1.7
SHMT2P34897 RPL23AP1-201ENST00000428990 471 ntBASIC4.41□□□□□ -1.7
SHMT2P34897 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC4.41□□□□□ -1.7
SHMT2P34897 AL392003.1-201ENST00000434394 243 ntBASIC4.41□□□□□ -1.7
SHMT2P34897 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC4.41□□□□□ -1.7
SHMT2P34897 RPL23AP93-201ENST00000440847 484 ntBASIC4.41□□□□□ -1.7
SHMT2P34897 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC4.41□□□□□ -1.7
SHMT2P34897 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC4.41□□□□□ -1.7
SHMT2P34897 AC096741.1-201ENST00000472250 846 ntBASIC4.41□□□□□ -1.7
SHMT2P34897 AC006463.2-201ENST00000473326 348 ntBASIC4.41□□□□□ -1.7
SHMT2P34897 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.41□□□□□ -1.7
SHMT2P34897 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC4.41□□□□□ -1.7
SHMT2P34897 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
SHMT2P34897 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
SHMT2P34897 AL049874.4-201ENST00000557593 255 ntBASIC4.41□□□□□ -1.7
SHMT2P34897 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC4.41□□□□□ -1.7
SHMT2P34897 AC122134.1-201ENST00000565664 1104 ntBASIC4.41□□□□□ -1.7
SHMT2P34897 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC4.41□□□□□ -1.7
SHMT2P34897 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC4.41□□□□□ -1.7
SHMT2P34897 AC023762.1-201ENST00000603280 584 ntBASIC4.41□□□□□ -1.7
SHMT2P34897 AC023509.5-201ENST00000617434 807 ntBASIC4.41□□□□□ -1.7
SHMT2P34897 AL158062.1-201ENST00000619632 745 ntBASIC4.41□□□□□ -1.7
SHMT2P34897 TEX41-256ENST00000626411 368 ntTSL 5 BASIC4.41□□□□□ -1.7
SHMT2P34897 LINC01808-202ENST00000641680 1116 ntBASIC4.41□□□□□ -1.7
SHMT2P34897 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.41□□□□□ -1.7
SHMT2P34897 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
SHMT2P34897 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
SHMT2P34897 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
SHMT2P34897 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
SHMT2P34897 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC4.41□□□□□ -1.7
SHMT2P34897 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.4□□□□□ -1.7
SHMT2P34897 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.7
SHMT2P34897 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.4□□□□□ -1.7
SHMT2P34897 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.4□□□□□ -1.7
SHMT2P34897 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
SHMT2P34897 SCN1A-220ENST00000641603 12506 ntBASIC4.4□□□□□ -1.7
SHMT2P34897 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
SHMT2P34897 VN2R3P-201ENST00000422626 1412 ntBASIC4.4□□□□□ -1.7
SHMT2P34897 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
SHMT2P34897 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
SHMT2P34897 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
SHMT2P34897 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
SHMT2P34897 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.4□□□□□ -1.71
SHMT2P34897 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC4.4□□□□□ -1.71
SHMT2P34897 MIR921-201ENST00000401133 56 ntBASIC4.4□□□□□ -1.71
SHMT2P34897 ZNF736P10Y-201ENST00000403990 1110 ntBASIC4.4□□□□□ -1.71
SHMT2P34897 FCF1P5-201ENST00000406490 482 ntBASIC4.4□□□□□ -1.71
SHMT2P34897 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC4.4□□□□□ -1.71
SHMT2P34897 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC4.4□□□□□ -1.71
SHMT2P34897 OR2X1P-201ENST00000421144 687 ntBASIC4.4□□□□□ -1.71
SHMT2P34897 ARAFP1-201ENST00000422172 605 ntBASIC4.4□□□□□ -1.71
SHMT2P34897 EIF4EP1-201ENST00000422311 642 ntBASIC4.4□□□□□ -1.71
SHMT2P34897 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC4.4□□□□□ -1.71
SHMT2P34897 AC068287.1-201ENST00000430283 295 ntBASIC4.4□□□□□ -1.71
SHMT2P34897 Z85994.2-201ENST00000434327 452 ntBASIC4.4□□□□□ -1.71
SHMT2P34897 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC4.4□□□□□ -1.71
SHMT2P34897 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.4□□□□□ -1.71
SHMT2P34897 TPT1P13-201ENST00000449760 499 ntBASIC4.4□□□□□ -1.71
SHMT2P34897 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC4.4□□□□□ -1.71
SHMT2P34897 C1DP3-201ENST00000455013 423 ntBASIC4.4□□□□□ -1.71
SHMT2P34897 MTND2P28-201ENST00000457540 1044 ntBASIC4.4□□□□□ -1.71
SHMT2P34897 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC4.4□□□□□ -1.71
SHMT2P34897 snoU13.1-201ENST00000459157 104 ntBASIC4.4□□□□□ -1.71
SHMT2P34897 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
SHMT2P34897 AK4P6-201ENST00000505168 528 ntBASIC4.4□□□□□ -1.71
SHMT2P34897 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC4.4□□□□□ -1.71
SHMT2P34897 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC4.4□□□□□ -1.71
SHMT2P34897 AC015795.1-201ENST00000513669 327 ntBASIC4.4□□□□□ -1.71
SHMT2P34897 RNU6-551P-201ENST00000516661 103 ntBASIC4.4□□□□□ -1.71
SHMT2P34897 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC4.4□□□□□ -1.71
SHMT2P34897 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC4.4□□□□□ -1.71
SHMT2P34897 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
SHMT2P34897 DUX4L52-201ENST00000549363 777 ntBASIC4.4□□□□□ -1.71
SHMT2P34897 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC4.4□□□□□ -1.71
SHMT2P34897 AC084783.1-201ENST00000565846 910 ntBASIC4.4□□□□□ -1.71
SHMT2P34897 AC091178.1-203ENST00000584586 279 ntBASIC4.4□□□□□ -1.71
SHMT2P34897 ADAD1P2-201ENST00000588476 646 ntBASIC4.4□□□□□ -1.71
SHMT2P34897 RPL12P25-202ENST00000598100 674 ntBASIC4.4□□□□□ -1.71
SHMT2P34897 AC096553.1-201ENST00000605169 829 ntBASIC4.4□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms