Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.7□□□□□ -1.66
HOXA9P31269 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.7□□□□□ -1.66
HOXA9P31269 AL590609.2-201ENST00000421430 368 ntBASIC4.7□□□□□ -1.66
HOXA9P31269 KCTD10P1-201ENST00000434203 625 ntBASIC4.7□□□□□ -1.66
HOXA9P31269 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
HOXA9P31269 RPL7AP52-201ENST00000458096 790 ntBASIC4.7□□□□□ -1.66
HOXA9P31269 RPS20P4-201ENST00000461659 355 ntBASIC4.7□□□□□ -1.66
HOXA9P31269 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.7□□□□□ -1.66
HOXA9P31269 RN7SL809P-201ENST00000482040 297 ntBASIC4.7□□□□□ -1.66
HOXA9P31269 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC4.7□□□□□ -1.66
HOXA9P31269 SNORA31.9-201ENST00000516429 84 ntBASIC4.7□□□□□ -1.66
HOXA9P31269 ARL6IP1P1-201ENST00000545836 610 ntBASIC4.7□□□□□ -1.66
HOXA9P31269 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC4.7□□□□□ -1.66
HOXA9P31269 AC090515.3-201ENST00000560431 315 ntBASIC4.7□□□□□ -1.66
HOXA9P31269 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
HOXA9P31269 BPIFA4P-203ENST00000603168 689 ntBASIC4.7□□□□□ -1.66
HOXA9P31269 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC4.7□□□□□ -1.66
HOXA9P31269 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
HOXA9P31269 AP000542.2-201ENST00000623199 6179 ntBASIC4.7□□□□□ -1.66
HOXA9P31269 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
HOXA9P31269 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
HOXA9P31269 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.7□□□□□ -1.66
HOXA9P31269 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.7□□□□□ -1.66
HOXA9P31269 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
HOXA9P31269 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC4.69□□□□□ -1.66
HOXA9P31269 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.69□□□□□ -1.66
HOXA9P31269 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
HOXA9P31269 HSPA8P17-201ENST00000427029 1382 ntBASIC4.69□□□□□ -1.66
HOXA9P31269 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
HOXA9P31269 AL121657.1-201ENST00000327215 531 ntBASIC4.69□□□□□ -1.66
HOXA9P31269 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
HOXA9P31269 MIR3065-201ENST00000390137 79 ntBASIC4.69□□□□□ -1.66
HOXA9P31269 RN7SKP27-201ENST00000410684 333 ntBASIC4.69□□□□□ -1.66
HOXA9P31269 NPM1P26-201ENST00000426339 738 ntBASIC4.69□□□□□ -1.66
HOXA9P31269 SCP2-206ENST00000430330 938 ntTSL 2 BASIC4.69□□□□□ -1.66
HOXA9P31269 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
HOXA9P31269 NMNAT1P2-201ENST00000435192 860 ntBASIC4.69□□□□□ -1.66
HOXA9P31269 NPM1P48-201ENST00000436002 853 ntBASIC4.69□□□□□ -1.66
HOXA9P31269 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.69□□□□□ -1.66
HOXA9P31269 AC090686.1-201ENST00000481577 749 ntBASIC4.69□□□□□ -1.66
HOXA9P31269 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC4.69□□□□□ -1.66
HOXA9P31269 AC041039.1-201ENST00000485656 536 ntBASIC4.69□□□□□ -1.66
HOXA9P31269 AC111000.5-201ENST00000506559 1178 ntBASIC4.69□□□□□ -1.66
HOXA9P31269 PARP4P3-201ENST00000510265 317 ntBASIC4.69□□□□□ -1.66
HOXA9P31269 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC4.69□□□□□ -1.66
HOXA9P31269 EIF4EP5-201ENST00000528228 640 ntBASIC4.69□□□□□ -1.66
HOXA9P31269 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.69□□□□□ -1.66
HOXA9P31269 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC4.69□□□□□ -1.66
HOXA9P31269 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC4.69□□□□□ -1.66
HOXA9P31269 AC079587.1-201ENST00000603846 277 ntBASIC4.69□□□□□ -1.66
HOXA9P31269 AL109618.2-201ENST00000605527 211 ntBASIC4.69□□□□□ -1.66
HOXA9P31269 AC020634.1-201ENST00000608701 549 ntBASIC4.69□□□□□ -1.66
HOXA9P31269 MIR6891-201ENST00000618788 93 ntBASIC4.69□□□□□ -1.66
HOXA9P31269 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.69□□□□□ -1.66
HOXA9P31269 AC140479.6-201ENST00000633535 357 ntBASIC4.69□□□□□ -1.66
HOXA9P31269 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
HOXA9P31269 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
HOXA9P31269 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
HOXA9P31269 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
HOXA9P31269 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
HOXA9P31269 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.69□□□□□ -1.66
HOXA9P31269 AC000123.3-201ENST00000624029 4975 ntBASIC4.68□□□□□ -1.66
HOXA9P31269 AC083843.3-201ENST00000623679 2186 ntBASIC4.68□□□□□ -1.66
HOXA9P31269 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.68□□□□□ -1.66
HOXA9P31269 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
HOXA9P31269 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.68□□□□□ -1.66
HOXA9P31269 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC4.68□□□□□ -1.66
HOXA9P31269 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HOXA9P31269 AC008033.1-201ENST00000216407 1162 ntBASIC4.68□□□□□ -1.66
HOXA9P31269 RNU1-132P-201ENST00000364300 164 ntBASIC4.68□□□□□ -1.66
HOXA9P31269 RNU6-178P-201ENST00000384631 104 ntBASIC4.68□□□□□ -1.66
HOXA9P31269 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXA9P31269 AC012671.1-201ENST00000451912 203 ntBASIC4.68□□□□□ -1.66
HOXA9P31269 AL445433.1-201ENST00000457507 257 ntBASIC4.68□□□□□ -1.66
HOXA9P31269 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC4.68□□□□□ -1.66
HOXA9P31269 BTG4P1-201ENST00000510421 183 ntBASIC4.68□□□□□ -1.66
HOXA9P31269 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC4.68□□□□□ -1.66
HOXA9P31269 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXA9P31269 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXA9P31269 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXA9P31269 SULT1C2P2-201ENST00000562517 294 ntBASIC4.68□□□□□ -1.66
HOXA9P31269 DISC1FP1-203ENST00000562678 796 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXA9P31269 ADAD1P2-201ENST00000588476 646 ntBASIC4.68□□□□□ -1.66
HOXA9P31269 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HOXA9P31269 RNF138P2-201ENST00000603490 592 ntBASIC4.68□□□□□ -1.66
HOXA9P31269 AC087468.1-201ENST00000604365 630 ntBASIC4.68□□□□□ -1.66
HOXA9P31269 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXA9P31269 AC015804.1-201ENST00000622935 435 ntBASIC4.68□□□□□ -1.66
HOXA9P31269 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HOXA9P31269 AL513548.1-201ENST00000562904 1724 ntBASIC4.68□□□□□ -1.66
HOXA9P31269 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC4.68□□□□□ -1.66
HOXA9P31269 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HOXA9P31269 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
HOXA9P31269 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
HOXA9P31269 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.67□□□□□ -1.66
HOXA9P31269 SMG1P4-204ENST00000523028 4131 ntBASIC4.67□□□□□ -1.66
HOXA9P31269 AC005261.4-201ENST00000600047 1385 ntBASIC4.67□□□□□ -1.66
HOXA9P31269 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HOXA9P31269 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
HOXA9P31269 MIR383-201ENST00000362257 73 ntBASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms