Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.27□□□□□ -1.57
COL5A3P25940 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC5.27□□□□□ -1.57
COL5A3P25940 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC5.27□□□□□ -1.57
COL5A3P25940 AL079305.1-201ENST00000623159 3008 ntBASIC5.27□□□□□ -1.57
COL5A3P25940 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL5A3P25940 AL049781.1-201ENST00000623195 3585 ntBASIC5.26□□□□□ -1.57
COL5A3P25940 CASC19-204ENST00000641001 2055 ntBASIC5.26□□□□□ -1.57
COL5A3P25940 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL5A3P25940 ACEA_U3.1-201ENST00000363057 217 ntBASIC5.26□□□□□ -1.57
COL5A3P25940 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
COL5A3P25940 RNA5SP372-201ENST00000390836 115 ntBASIC5.26□□□□□ -1.57
COL5A3P25940 AL078604.1-201ENST00000404609 466 ntBASIC5.26□□□□□ -1.57
COL5A3P25940 OR2AH1P-201ENST00000425717 928 ntBASIC5.26□□□□□ -1.57
COL5A3P25940 AC006499.6-201ENST00000511169 607 ntBASIC5.26□□□□□ -1.57
COL5A3P25940 RN7SKP141-201ENST00000516167 338 ntBASIC5.26□□□□□ -1.57
COL5A3P25940 RN7SKP157-201ENST00000516174 282 ntBASIC5.26□□□□□ -1.57
COL5A3P25940 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC5.26□□□□□ -1.57
COL5A3P25940 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC5.26□□□□□ -1.57
COL5A3P25940 AL357559.1-201ENST00000622228 274 ntBASIC5.26□□□□□ -1.57
COL5A3P25940 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC5.26□□□□□ -1.57
COL5A3P25940 AC009093.8-201ENST00000641769 292 ntBASIC5.26□□□□□ -1.57
COL5A3P25940 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL5A3P25940 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
COL5A3P25940 AL022393.1-201ENST00000625142 1677 ntBASIC5.26□□□□□ -1.57
COL5A3P25940 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL5A3P25940 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
COL5A3P25940 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL5A3P25940 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
COL5A3P25940 TINAG-201ENST00000259782 1754 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL5A3P25940 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC5.26□□□□□ -1.57
COL5A3P25940 RPS20P21-201ENST00000466859 343 ntBASIC5.26□□□□□ -1.57
COL5A3P25940 RPS4XP15-201ENST00000489210 795 ntBASIC5.26□□□□□ -1.57
COL5A3P25940 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC5.26□□□□□ -1.57
COL5A3P25940 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC5.26□□□□□ -1.57
COL5A3P25940 RN7SL435P-201ENST00000584418 282 ntBASIC5.26□□□□□ -1.57
COL5A3P25940 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC5.26□□□□□ -1.57
COL5A3P25940 AC015908.5-201ENST00000623289 343 ntBASIC5.26□□□□□ -1.57
COL5A3P25940 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL5A3P25940 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC5.25□□□□□ -1.57
COL5A3P25940 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL5A3P25940 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC5.25□□□□□ -1.57
COL5A3P25940 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL5A3P25940 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL5A3P25940 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
COL5A3P25940 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
COL5A3P25940 HUWE1-203ENST00000342160 14796 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
COL5A3P25940 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.25□□□□□ -1.57
COL5A3P25940 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL5A3P25940 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
COL5A3P25940 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC5.25□□□□□ -1.57
COL5A3P25940 SNORA11.2-201ENST00000408318 127 ntBASIC5.25□□□□□ -1.57
COL5A3P25940 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC5.25□□□□□ -1.57
COL5A3P25940 AL050321.1-201ENST00000432363 400 ntBASIC5.25□□□□□ -1.57
COL5A3P25940 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC5.25□□□□□ -1.57
COL5A3P25940 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC5.25□□□□□ -1.57
COL5A3P25940 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC5.25□□□□□ -1.57
COL5A3P25940 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC5.25□□□□□ -1.57
COL5A3P25940 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC5.25□□□□□ -1.57
COL5A3P25940 RN7SL339P-201ENST00000580597 296 ntBASIC5.25□□□□□ -1.57
COL5A3P25940 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC5.25□□□□□ -1.57
COL5A3P25940 AC008966.2-201ENST00000606157 453 ntBASIC5.25□□□□□ -1.57
COL5A3P25940 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.25□□□□□ -1.57
COL5A3P25940 MIR8069-1-201ENST00000616627 86 ntBASIC5.25□□□□□ -1.57
COL5A3P25940 MIR8069-2-201ENST00000621412 86 ntBASIC5.25□□□□□ -1.57
COL5A3P25940 AC020978.9-201ENST00000624380 1141 ntBASIC5.25□□□□□ -1.57
COL5A3P25940 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC5.25□□□□□ -1.57
COL5A3P25940 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.25□□□□□ -1.57
COL5A3P25940 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
COL5A3P25940 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
COL5A3P25940 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC5.24□□□□□ -1.57
COL5A3P25940 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
COL5A3P25940 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
COL5A3P25940 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC5.24□□□□□ -1.57
COL5A3P25940 SNORA11.1-201ENST00000408133 129 ntBASIC5.24□□□□□ -1.57
COL5A3P25940 AC068533.1-201ENST00000418542 415 ntBASIC5.24□□□□□ -1.57
COL5A3P25940 VTI1BP4-201ENST00000427516 527 ntBASIC5.24□□□□□ -1.57
COL5A3P25940 BNIP3P41-201ENST00000503774 571 ntBASIC5.24□□□□□ -1.57
COL5A3P25940 AC006499.5-201ENST00000505037 514 ntBASIC5.24□□□□□ -1.57
COL5A3P25940 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
COL5A3P25940 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC5.24□□□□□ -1.57
COL5A3P25940 AL359219.2-201ENST00000555184 348 ntBASIC5.24□□□□□ -1.57
COL5A3P25940 AC124068.1-201ENST00000563131 678 ntBASIC5.24□□□□□ -1.57
COL5A3P25940 AC027455.1-201ENST00000574104 594 ntBASIC5.24□□□□□ -1.57
COL5A3P25940 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC5.24□□□□□ -1.57
COL5A3P25940 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC5.24□□□□□ -1.57
COL5A3P25940 FP236240.3-201ENST00000623061 327 ntBASIC5.24□□□□□ -1.57
COL5A3P25940 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC5.24□□□□□ -1.57
COL5A3P25940 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.24□□□□□ -1.57
COL5A3P25940 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC5.24□□□□□ -1.57
COL5A3P25940 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
COL5A3P25940 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
COL5A3P25940 FAP-203ENST00000443424 2598 ntTSL 2 BASIC5.24□□□□□ -1.57
COL5A3P25940 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
COL5A3P25940 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
COL5A3P25940 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC5.24□□□□□ -1.57
COL5A3P25940 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC5.23□□□□□ -1.57
COL5A3P25940 ZNF285B-201ENST00000561698 1767 ntBASIC5.23□□□□□ -1.57
COL5A3P25940 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL5A3P25940 RAB9AP3-201ENST00000412737 573 ntBASIC5.23□□□□□ -1.57
COL5A3P25940 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 95.2 ms