Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 IPO5-229ENST00000631030 192 ntTSL 5 BASIC3.46□□□□□ -1.86
HLA-DMBP28068 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC3.46□□□□□ -1.86
HLA-DMBP28068 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
HLA-DMBP28068 Z98755.1-201ENST00000407015 1384 ntBASIC3.46□□□□□ -1.86
HLA-DMBP28068 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC3.46□□□□□ -1.86
HLA-DMBP28068 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.46□□□□□ -1.86
HLA-DMBP28068 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
HLA-DMBP28068 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC3.45□□□□□ -1.86
HLA-DMBP28068 VPS35P1-201ENST00000563400 1518 ntBASIC3.45□□□□□ -1.86
HLA-DMBP28068 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
HLA-DMBP28068 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
HLA-DMBP28068 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC3.45□□□□□ -1.86
HLA-DMBP28068 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
HLA-DMBP28068 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC3.45□□□□□ -1.86
HLA-DMBP28068 AC010132.2-201ENST00000295493 1043 ntBASIC3.45□□□□□ -1.86
HLA-DMBP28068 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
HLA-DMBP28068 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
HLA-DMBP28068 AL590240.1-201ENST00000334118 313 ntBASIC3.45□□□□□ -1.86
HLA-DMBP28068 RNA5SP502-201ENST00000362694 119 ntBASIC3.45□□□□□ -1.86
HLA-DMBP28068 RNU6-984P-201ENST00000363236 109 ntBASIC3.45□□□□□ -1.86
HLA-DMBP28068 RNVU1-6-201ENST00000364688 164 ntBASIC3.45□□□□□ -1.86
HLA-DMBP28068 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
HLA-DMBP28068 RNU1-63P-201ENST00000383902 164 ntBASIC3.45□□□□□ -1.86
HLA-DMBP28068 AC104297.1-201ENST00000393779 870 ntBASIC3.45□□□□□ -1.86
HLA-DMBP28068 RPS4XP9-201ENST00000405151 780 ntBASIC3.45□□□□□ -1.86
HLA-DMBP28068 RN7SKP100-201ENST00000411258 284 ntBASIC3.45□□□□□ -1.86
HLA-DMBP28068 EIF4A1P3-201ENST00000411521 244 ntBASIC3.45□□□□□ -1.86
HLA-DMBP28068 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC3.45□□□□□ -1.86
HLA-DMBP28068 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC3.45□□□□□ -1.86
HLA-DMBP28068 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC3.45□□□□□ -1.86
HLA-DMBP28068 H2AFZP6-201ENST00000444403 394 ntBASIC3.45□□□□□ -1.86
HLA-DMBP28068 GEMIN8P3-201ENST00000445417 720 ntBASIC3.45□□□□□ -1.86
HLA-DMBP28068 AC073264.2-201ENST00000448886 166 ntBASIC3.45□□□□□ -1.86
HLA-DMBP28068 TPT1P13-201ENST00000449760 499 ntBASIC3.45□□□□□ -1.86
HLA-DMBP28068 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC3.45□□□□□ -1.86
HLA-DMBP28068 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC3.45□□□□□ -1.86
HLA-DMBP28068 ISCUP1-201ENST00000454451 448 ntBASIC3.45□□□□□ -1.86
HLA-DMBP28068 RPS29P33-201ENST00000456717 146 ntBASIC3.45□□□□□ -1.86
HLA-DMBP28068 ZFRP1-201ENST00000457579 2970 ntBASIC3.45□□□□□ -1.86
HLA-DMBP28068 AC104763.1-201ENST00000475274 360 ntBASIC3.45□□□□□ -1.86
HLA-DMBP28068 AC011005.3-201ENST00000491624 395 ntBASIC3.45□□□□□ -1.86
HLA-DMBP28068 RPL23AP72-201ENST00000492447 435 ntBASIC3.45□□□□□ -1.86
HLA-DMBP28068 IGLV3-26-201ENST00000520756 302 ntBASIC3.45□□□□□ -1.86
HLA-DMBP28068 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC3.45□□□□□ -1.86
HLA-DMBP28068 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC3.45□□□□□ -1.86
HLA-DMBP28068 SOX5P1-201ENST00000524155 1127 ntBASIC3.45□□□□□ -1.86
HLA-DMBP28068 AP006289.1-201ENST00000538089 277 ntBASIC3.45□□□□□ -1.86
HLA-DMBP28068 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC3.45□□□□□ -1.86
HLA-DMBP28068 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC3.45□□□□□ -1.86
HLA-DMBP28068 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC3.45□□□□□ -1.86
HLA-DMBP28068 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC3.45□□□□□ -1.86
HLA-DMBP28068 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC3.45□□□□□ -1.86
HLA-DMBP28068 SNORD39.2-201ENST00000579995 76 ntBASIC3.45□□□□□ -1.86
HLA-DMBP28068 ADAD1P2-201ENST00000588476 646 ntBASIC3.45□□□□□ -1.86
HLA-DMBP28068 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC3.45□□□□□ -1.86
HLA-DMBP28068 AC090181.2-201ENST00000602975 672 ntBASIC3.45□□□□□ -1.86
HLA-DMBP28068 AC091979.2-201ENST00000607514 214 ntBASIC3.45□□□□□ -1.86
HLA-DMBP28068 AC015813.4-201ENST00000610469 179 ntBASIC3.45□□□□□ -1.86
HLA-DMBP28068 AC026368.1-201ENST00000614934 690 ntBASIC3.45□□□□□ -1.86
HLA-DMBP28068 AC023509.5-201ENST00000617434 807 ntBASIC3.45□□□□□ -1.86
HLA-DMBP28068 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC3.45□□□□□ -1.86
HLA-DMBP28068 AC010435.1-201ENST00000623353 1177 ntBASIC3.45□□□□□ -1.86
HLA-DMBP28068 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC3.45□□□□□ -1.86
HLA-DMBP28068 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
HLA-DMBP28068 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
HLA-DMBP28068 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
HLA-DMBP28068 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
HLA-DMBP28068 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.45□□□□□ -1.86
HLA-DMBP28068 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC3.45□□□□□ -1.86
HLA-DMBP28068 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC3.45□□□□□ -1.86
HLA-DMBP28068 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
HLA-DMBP28068 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
HLA-DMBP28068 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.45□□□□□ -1.86
HLA-DMBP28068 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC3.44□□□□□ -1.86
HLA-DMBP28068 AC010928.1-201ENST00000592477 1447 ntBASIC3.44□□□□□ -1.86
HLA-DMBP28068 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.44□□□□□ -1.86
HLA-DMBP28068 SUPT16HP1-201ENST00000537175 3133 ntBASIC3.44□□□□□ -1.86
HLA-DMBP28068 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
HLA-DMBP28068 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC3.44□□□□□ -1.86
HLA-DMBP28068 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC3.44□□□□□ -1.86
HLA-DMBP28068 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
HLA-DMBP28068 AC074029.4-201ENST00000624796 1859 ntBASIC3.44□□□□□ -1.86
HLA-DMBP28068 AC017104.4-201ENST00000636283 1592 ntBASIC3.44□□□□□ -1.86
HLA-DMBP28068 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC3.44□□□□□ -1.86
HLA-DMBP28068 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
HLA-DMBP28068 SNORA56-201ENST00000383966 129 ntBASIC3.44□□□□□ -1.86
HLA-DMBP28068 RNU6-398P-201ENST00000384143 109 ntBASIC3.44□□□□□ -1.86
HLA-DMBP28068 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
HLA-DMBP28068 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
HLA-DMBP28068 RN7SKP267-201ENST00000410381 285 ntBASIC3.44□□□□□ -1.86
HLA-DMBP28068 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
HLA-DMBP28068 AC119751.6-201ENST00000416712 186 ntBASIC3.44□□□□□ -1.86
HLA-DMBP28068 BX510359.2-201ENST00000417920 305 ntBASIC3.44□□□□□ -1.86
HLA-DMBP28068 MTCO1P51-201ENST00000427672 1060 ntBASIC3.44□□□□□ -1.86
HLA-DMBP28068 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC3.44□□□□□ -1.86
HLA-DMBP28068 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC3.44□□□□□ -1.86
HLA-DMBP28068 AL138878.2-201ENST00000440581 1241 ntBASIC3.44□□□□□ -1.86
HLA-DMBP28068 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC3.44□□□□□ -1.86
HLA-DMBP28068 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC3.44□□□□□ -1.86
HLA-DMBP28068 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms