Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 EHHADH-201ENST00000231887 3850 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 OR1Q1-201ENST00000297913 945 ntAPPRIS P1 BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 MAPK14-203ENST00000310795 1066 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 RN7SKP130-201ENST00000364924 301 ntBASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 RN7SKP189-201ENST00000365042 330 ntBASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 SNORD42.2-201ENST00000365570 69 ntBASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 RNA5SP122-201ENST00000384457 108 ntBASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 HMGB3P7-201ENST00000400214 611 ntBASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 AC127526.1-201ENST00000417526 366 ntBASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 BEND7P1-201ENST00000422058 457 ntBASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 AC000089.1-201ENST00000424559 801 ntBASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 AC137499.1-201ENST00000427602 88 ntBASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 AC099796.1-201ENST00000433377 683 ntTSL 3 BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 AC128677.1-201ENST00000436016 442 ntBASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 AL391361.2-203ENST00000443380 413 ntTSL 2 BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 FGF7P3-201ENST00000454645 303 ntBASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 PTMAP1-205ENST00000455552 325 ntBASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 UCK2-205ENST00000469256 753 ntTSL 3 BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 RPL23AP41-201ENST00000484754 458 ntBASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 AC011005.3-201ENST00000491624 395 ntBASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 UBE2Q2P10-201ENST00000514854 900 ntBASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 RNU4-49P-201ENST00000516080 140 ntBASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 RN7SKP256-201ENST00000517201 314 ntBASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 AC090572.1-201ENST00000519251 160 ntBASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 IGHVIII-76-1-201ENST00000523776 286 ntBASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 ELOCP31-201ENST00000540463 467 ntBASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 OR4T1P-201ENST00000554933 911 ntBASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 AL355836.1-201ENST00000555951 870 ntBASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 AC060809.1-201ENST00000559211 564 ntTSL 4 BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 AC010809.1-201ENST00000560268 562 ntTSL 3 BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 RAB27A-205ENST00000564609 1057 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 RPL7AP69-201ENST00000595306 806 ntBASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 ZRANB2-AS2-215ENST00000596952 624 ntTSL 5 BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 Metazoa_SRP.57-201ENST00000597717 283 ntBASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 GLUD1P2-202ENST00000630097 606 ntTSL 3 BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 TCL6-206ENST00000467865 3663 ntTSL 2 BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 PDZK1P1-201ENST00000401008 3498 ntTSL 2 BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 OR52B5P-204ENST00000641744 3467 ntBASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 STARD4-AS1-201ENST00000500779 5525 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 PPP4R3CP-201ENST00000412172 3131 ntAPPRIS P1 BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 AC002384.1-203ENST00000602761 3049 ntTSL 3 BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 RAPGEF5-201ENST00000344041 6621 ntAPPRIS P1 TSL 5 BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 GABPB2-202ENST00000368918 8964 ntAPPRIS P3 TSL 1 (best) BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 IL1RAP-202ENST00000317757 5413 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 UGT2B4-201ENST00000305107 2103 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 OR1L8-202ENST00000641027 2024 ntAPPRIS P1 BASIC7.39□□□□□ -1.23
LIMD1Q9UGP4 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 AC004988.1-201ENST00000415237 1771 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 CFHR5-201ENST00000256785 2810 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 ZNF462-201ENST00000277225 10414 ntAPPRIS P2 TSL 1 (best) BASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 NPIPB5-205ENST00000424340 3801 ntAPPRIS P2 TSL 1 (best) BASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 AC092807.3-203ENST00000467530 2745 ntTSL 2 BASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 UTY-212ENST00000545955 6817 ntAPPRIS P5 TSL 1 (best) BASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 SYNPO2-202ENST00000429713 9920 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 AC009264.1-207ENST00000425981 1538 ntTSL 2 BASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 KNL1-201ENST00000346991 9573 ntAPPRIS P4 TSL 1 (best) BASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 TEKT1-201ENST00000338694 3421 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 POLH-201ENST00000372226 3322 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 CDC7-203ENST00000428239 3313 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 SSX5-201ENST00000311798 1384 ntAPPRIS P4 TSL 5 BASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 ZFY-207ENST00000625061 2273 ntTSL 2 BASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 ODF3-202ENST00000342593 386 ntTSL 5 BASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 RN7SKP6-201ENST00000364795 319 ntBASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 SNORA64.3-201ENST00000365647 134 ntBASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 ZSCAN12P1-201ENST00000406489 419 ntBASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 AL021937.4-201ENST00000444848 444 ntTSL 3 BASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 BX323845.2-201ENST00000458382 234 ntBASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 AC007547.1-201ENST00000462177 490 ntBASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 AC233702.1-201ENST00000482905 502 ntBASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 AC093816.1-201ENST00000515076 913 ntBASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 AC093878.1-201ENST00000515630 432 ntBASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 IGKV2D-38-201ENST00000518423 240 ntBASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 AC117373.1-201ENST00000544036 392 ntTSL 3 BASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 DPPA3P2-201ENST00000553589 478 ntBASIC7.38□□□□□ -1.23
LIMD1Q9UGP4 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC7.38□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms