Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 AC008432.1-201ENST00000615912 1320 ntBASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 CYP1D1P-201ENST00000416662 1433 ntBASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 FHIT-201ENST00000341848 174 ntTSL 3 BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 RNA5SP183-201ENST00000362452 119 ntBASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 MIR192-201ENST00000384915 110 ntBASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 DEFB130D-201ENST00000426866 237 ntBASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 RPL19P16-201ENST00000433839 588 ntBASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 OR52B5P-201ENST00000435337 951 ntBASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 CYCSP12-201ENST00000437729 300 ntBASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 AC006335.2-201ENST00000437993 330 ntBASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 MED6P1-201ENST00000439659 713 ntBASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 AC245047.2-201ENST00000441060 530 ntBASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 PRPF38AP1-201ENST00000451976 933 ntBASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 RPS6P2-201ENST00000454208 705 ntBASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 RPL21P18-201ENST00000469899 480 ntBASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 MTND6P6-201ENST00000478031 263 ntBASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 AC109462.1-201ENST00000491087 368 ntBASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 RPS12P31-201ENST00000491419 398 ntBASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 PGAM1P13-201ENST00000507497 754 ntBASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 OR5AZ1P-201ENST00000527448 943 ntBASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 BRD9P1-201ENST00000529855 560 ntBASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 AC087894.1-201ENST00000538359 518 ntBASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 BNIP3P1-201ENST00000547295 580 ntBASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 AC126365.2-201ENST00000580630 379 ntBASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 AP000919.1-202ENST00000581139 1264 ntBASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 AL391001.1-201ENST00000602747 715 ntBASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 AC126915.2-201ENST00000610957 190 ntBASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 VN1R9P-201ENST00000614184 867 ntBASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 OR52B5P-202ENST00000641118 1110 ntBASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 AC073869.8-201ENST00000641806 335 ntBASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 CASC19-261ENST00000641853 1638 ntBASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 AC100871.1-201ENST00000507871 1456 ntBASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 AC007382.1-201ENST00000624376 2618 ntBASIC4.41□□□□□ -1.7
PDLIM3Q53GG5 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.7
PDLIM3Q53GG5 USP45-204ENST00000369233 2514 ntTSL 5 BASIC4.4□□□□□ -1.7
PDLIM3Q53GG5 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC4.4□□□□□ -1.7
PDLIM3Q53GG5 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.7
PDLIM3Q53GG5 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC4.4□□□□□ -1.7
PDLIM3Q53GG5 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
PDLIM3Q53GG5 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC4.4□□□□□ -1.7
PDLIM3Q53GG5 ALB-219ENST00000621085 1418 ntTSL 5 BASIC4.4□□□□□ -1.7
PDLIM3Q53GG5 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC4.4□□□□□ -1.7
PDLIM3Q53GG5 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
PDLIM3Q53GG5 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.7
PDLIM3Q53GG5 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC4.4□□□□□ -1.7
PDLIM3Q53GG5 NEAT1-202ENST00000501122 22743 ntBASIC4.4□□□□□ -1.7
PDLIM3Q53GG5 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 AC005294.1-201ENST00000355509 281 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 OR1L6-202ENST00000373684 1044 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 MIR122-201ENST00000385044 85 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 AL355615.1-201ENST00000406187 641 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 LINC01881-201ENST00000416103 412 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 AL358176.3-201ENST00000420757 454 ntBASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
PDLIM3Q53GG5 HNRNPA3P4-201ENST00000427514 803 ntBASIC4.4□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms