Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AP002802.2-201ENST00000605877 235 ntBASIC5.02□□□□□ -1.61
COL28A1Q2UY09 AP001521.2-201ENST00000608772 546 ntBASIC5.02□□□□□ -1.61
COL28A1Q2UY09 AC019193.2-201ENST00000610012 634 ntBASIC5.02□□□□□ -1.61
COL28A1Q2UY09 RNU6-1192P-201ENST00000612197 107 ntBASIC5.02□□□□□ -1.61
COL28A1Q2UY09 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC5.02□□□□□ -1.61
COL28A1Q2UY09 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
COL28A1Q2UY09 RNU6-489P-201ENST00000618289 107 ntBASIC5.02□□□□□ -1.61
COL28A1Q2UY09 MIR6830-201ENST00000636015 70 ntBASIC5.02□□□□□ -1.61
COL28A1Q2UY09 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
COL28A1Q2UY09 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
COL28A1Q2UY09 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
COL28A1Q2UY09 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC5.02□□□□□ -1.61
COL28A1Q2UY09 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL28A1Q2UY09 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
COL28A1Q2UY09 AC093311.1-201ENST00000506586 2021 ntBASIC5.02□□□□□ -1.61
COL28A1Q2UY09 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
COL28A1Q2UY09 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.02□□□□□ -1.61
COL28A1Q2UY09 AC025574.1-201ENST00000554784 1653 ntBASIC5.02□□□□□ -1.61
COL28A1Q2UY09 AL132640.2-201ENST00000559968 1698 ntBASIC5.02□□□□□ -1.61
COL28A1Q2UY09 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 SDAD1P1-202ENST00000524156 2051 ntBASIC5.01□□□□□ -1.61
COL28A1Q2UY09 RMST-202ENST00000541282 2099 ntTSL 2 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 SNORA72.3-201ENST00000365074 132 ntBASIC5.01□□□□□ -1.61
COL28A1Q2UY09 SNORD56.6-201ENST00000384569 71 ntBASIC5.01□□□□□ -1.61
COL28A1Q2UY09 RNU6-225P-201ENST00000384613 103 ntBASIC5.01□□□□□ -1.61
COL28A1Q2UY09 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 PTP4A1P7-201ENST00000423476 514 ntBASIC5.01□□□□□ -1.61
COL28A1Q2UY09 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 EIF4A2P4-201ENST00000458691 1196 ntBASIC5.01□□□□□ -1.61
COL28A1Q2UY09 AC063943.1-201ENST00000465434 453 ntBASIC5.01□□□□□ -1.61
COL28A1Q2UY09 AC034236.1-201ENST00000469891 373 ntBASIC5.01□□□□□ -1.61
COL28A1Q2UY09 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 KRTAP5-14P-201ENST00000502328 121 ntBASIC5.01□□□□□ -1.61
COL28A1Q2UY09 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 RN7SKP122-201ENST00000515923 296 ntBASIC5.01□□□□□ -1.61
COL28A1Q2UY09 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 AC023762.1-201ENST00000603280 584 ntBASIC5.01□□□□□ -1.61
COL28A1Q2UY09 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 AC017076.1-201ENST00000607613 578 ntBASIC5.01□□□□□ -1.61
COL28A1Q2UY09 AC112503.1-201ENST00000608436 391 ntBASIC5.01□□□□□ -1.61
COL28A1Q2UY09 AC090912.3-201ENST00000609775 533 ntBASIC5.01□□□□□ -1.61
COL28A1Q2UY09 OR4G3P-201ENST00000633500 913 ntBASIC5.01□□□□□ -1.61
COL28A1Q2UY09 OR52H1-202ENST00000641796 1061 ntBASIC5.01□□□□□ -1.61
COL28A1Q2UY09 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 Z98755.1-201ENST00000407015 1384 ntBASIC5.01□□□□□ -1.61
COL28A1Q2UY09 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 AC079097.1-201ENST00000512187 1399 ntBASIC5.01□□□□□ -1.61
COL28A1Q2UY09 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL28A1Q2UY09 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC5□□□□□ -1.61
COL28A1Q2UY09 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC5□□□□□ -1.61
COL28A1Q2UY09 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
COL28A1Q2UY09 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5□□□□□ -1.61
COL28A1Q2UY09 ATP5A1P1-201ENST00000454088 1321 ntBASIC5□□□□□ -1.61
COL28A1Q2UY09 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5□□□□□ -1.61
COL28A1Q2UY09 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5□□□□□ -1.61
COL28A1Q2UY09 AC019072.1-201ENST00000604535 1551 ntBASIC5□□□□□ -1.61
COL28A1Q2UY09 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5□□□□□ -1.61
COL28A1Q2UY09 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC5□□□□□ -1.61
COL28A1Q2UY09 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC5□□□□□ -1.61
COL28A1Q2UY09 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5□□□□□ -1.61
COL28A1Q2UY09 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
COL28A1Q2UY09 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5□□□□□ -1.61
COL28A1Q2UY09 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC5□□□□□ -1.61
COL28A1Q2UY09 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC5□□□□□ -1.61
COL28A1Q2UY09 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC5□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms