Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC3.97□□□□□ -1.77
CHD3Q12873 OR56B2P-202ENST00000641377 2453 ntBASIC3.97□□□□□ -1.77
CHD3Q12873 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.97□□□□□ -1.77
CHD3Q12873 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CHD3Q12873 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
CHD3Q12873 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC3.97□□□□□ -1.77
CHD3Q12873 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC3.97□□□□□ -1.77
CHD3Q12873 AC092162.1-201ENST00000432828 434 ntBASIC3.97□□□□□ -1.77
CHD3Q12873 RPS3AP54-201ENST00000435535 734 ntBASIC3.97□□□□□ -1.77
CHD3Q12873 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC3.97□□□□□ -1.77
CHD3Q12873 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC3.97□□□□□ -1.77
CHD3Q12873 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.97□□□□□ -1.77
CHD3Q12873 snoU13.22-201ENST00000459428 104 ntBASIC3.97□□□□□ -1.77
CHD3Q12873 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
CHD3Q12873 AC073073.1-201ENST00000493920 463 ntBASIC3.97□□□□□ -1.77
CHD3Q12873 AC138938.1-201ENST00000515431 782 ntBASIC3.97□□□□□ -1.77
CHD3Q12873 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.97□□□□□ -1.77
CHD3Q12873 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.97□□□□□ -1.77
CHD3Q12873 NPM1P6-201ENST00000521088 871 ntBASIC3.97□□□□□ -1.77
CHD3Q12873 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC3.97□□□□□ -1.77
CHD3Q12873 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC3.97□□□□□ -1.77
CHD3Q12873 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC3.97□□□□□ -1.77
CHD3Q12873 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
CHD3Q12873 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC3.97□□□□□ -1.77
CHD3Q12873 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC3.97□□□□□ -1.77
CHD3Q12873 AC015804.1-201ENST00000622935 435 ntBASIC3.97□□□□□ -1.77
CHD3Q12873 U3.53-201ENST00000628922 216 ntBASIC3.97□□□□□ -1.77
CHD3Q12873 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC3.97□□□□□ -1.77
CHD3Q12873 LDHAL6CP-202ENST00000550738 3224 ntBASIC3.97□□□□□ -1.77
CHD3Q12873 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
CHD3Q12873 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
CHD3Q12873 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
CHD3Q12873 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC3.97□□□□□ -1.77
CHD3Q12873 AP000756.2-201ENST00000624168 2567 ntBASIC3.97□□□□□ -1.77
CHD3Q12873 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CHD3Q12873 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
CHD3Q12873 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
CHD3Q12873 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
CHD3Q12873 MIR208A-201ENST00000362287 71 ntBASIC3.97□□□□□ -1.77
CHD3Q12873 RNA5SP387-201ENST00000364226 106 ntBASIC3.97□□□□□ -1.77
CHD3Q12873 RN7SKP199-201ENST00000410325 305 ntBASIC3.97□□□□□ -1.77
CHD3Q12873 RNU2-22P-201ENST00000411266 212 ntBASIC3.97□□□□□ -1.77
CHD3Q12873 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC3.97□□□□□ -1.77
CHD3Q12873 AL732292.1-201ENST00000426692 226 ntBASIC3.97□□□□□ -1.77
CHD3Q12873 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC3.97□□□□□ -1.77
CHD3Q12873 RPL23AP37-201ENST00000479658 549 ntBASIC3.97□□□□□ -1.77
CHD3Q12873 AC108145.1-201ENST00000503770 153 ntBASIC3.97□□□□□ -1.77
CHD3Q12873 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC3.97□□□□□ -1.77
CHD3Q12873 RNA5SP249-201ENST00000516127 99 ntBASIC3.97□□□□□ -1.77
CHD3Q12873 RNU1-45P-201ENST00000517191 141 ntBASIC3.97□□□□□ -1.77
CHD3Q12873 MTCO1P49-201ENST00000523429 802 ntBASIC3.97□□□□□ -1.77
CHD3Q12873 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC3.97□□□□□ -1.77
CHD3Q12873 ARL6IP1P1-201ENST00000545836 610 ntBASIC3.97□□□□□ -1.77
CHD3Q12873 AC006130.2-201ENST00000586202 326 ntBASIC3.97□□□□□ -1.77
CHD3Q12873 AC093765.1-201ENST00000603758 881 ntBASIC3.97□□□□□ -1.77
CHD3Q12873 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC3.97□□□□□ -1.77
CHD3Q12873 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC3.97□□□□□ -1.77
CHD3Q12873 AC068254.2-201ENST00000623938 3577 ntBASIC3.97□□□□□ -1.77
CHD3Q12873 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC3.96□□□□□ -1.77
CHD3Q12873 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
CHD3Q12873 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC3.96□□□□□ -1.77
CHD3Q12873 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.77
CHD3Q12873 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
CHD3Q12873 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.78
CHD3Q12873 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC3.96□□□□□ -1.78
CHD3Q12873 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
CHD3Q12873 AL592182.3-201ENST00000642132 3304 ntBASIC3.96□□□□□ -1.78
CHD3Q12873 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC3.96□□□□□ -1.78
CHD3Q12873 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
CHD3Q12873 RNU4-39P-201ENST00000362455 127 ntBASIC3.96□□□□□ -1.78
CHD3Q12873 SNORD46.1-201ENST00000364139 104 ntBASIC3.96□□□□□ -1.78
CHD3Q12873 SNORA70C-201ENST00000384538 135 ntBASIC3.96□□□□□ -1.78
CHD3Q12873 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
CHD3Q12873 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC3.96□□□□□ -1.78
CHD3Q12873 RAD23BP1-201ENST00000421404 1227 ntBASIC3.96□□□□□ -1.78
CHD3Q12873 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC3.96□□□□□ -1.78
CHD3Q12873 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC3.96□□□□□ -1.78
CHD3Q12873 DLD-204ENST00000437604 1859 ntTSL 2 BASIC3.96□□□□□ -1.78
CHD3Q12873 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC3.96□□□□□ -1.78
CHD3Q12873 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC3.96□□□□□ -1.78
CHD3Q12873 NDUFB4P12-201ENST00000513465 390 ntBASIC3.96□□□□□ -1.78
CHD3Q12873 AC015795.1-201ENST00000513669 327 ntBASIC3.96□□□□□ -1.78
CHD3Q12873 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
CHD3Q12873 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC3.96□□□□□ -1.78
CHD3Q12873 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC3.96□□□□□ -1.78
CHD3Q12873 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
CHD3Q12873 AC130352.1-201ENST00000602979 661 ntBASIC3.96□□□□□ -1.78
CHD3Q12873 IGKV2OR2-2-201ENST00000605025 300 ntBASIC3.96□□□□□ -1.78
CHD3Q12873 AL451049.1-201ENST00000608672 497 ntBASIC3.96□□□□□ -1.78
CHD3Q12873 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC3.96□□□□□ -1.78
CHD3Q12873 AP003497.2-201ENST00000624220 967 ntBASIC3.96□□□□□ -1.78
CHD3Q12873 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
CHD3Q12873 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC3.96□□□□□ -1.78
CHD3Q12873 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
CHD3Q12873 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CHD3Q12873 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC3.96□□□□□ -1.78
CHD3Q12873 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC3.96□□□□□ -1.78
CHD3Q12873 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
CHD3Q12873 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC3.96□□□□□ -1.78
CHD3Q12873 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms