Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC6.48□□□□□ -1.37
LIG3P49916 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC6.48□□□□□ -1.37
LIG3P49916 LSM1P2-201ENST00000604911 322 ntBASIC6.48□□□□□ -1.37
LIG3P49916 IGKV2OR2-1-201ENST00000605129 304 ntBASIC6.48□□□□□ -1.37
LIG3P49916 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC6.48□□□□□ -1.37
LIG3P49916 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC6.48□□□□□ -1.37
LIG3P49916 AL359091.2-201ENST00000609303 556 ntBASIC6.48□□□□□ -1.37
LIG3P49916 MRPL57P1-201ENST00000621486 265 ntBASIC6.48□□□□□ -1.37
LIG3P49916 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC6.48□□□□□ -1.37
LIG3P49916 AC010325.3-201ENST00000641084 394 ntBASIC6.48□□□□□ -1.37
LIG3P49916 OR52B5P-202ENST00000641118 1110 ntBASIC6.48□□□□□ -1.37
LIG3P49916 AP000473.2-201ENST00000602659 1537 ntBASIC6.48□□□□□ -1.37
LIG3P49916 ZNF528-201ENST00000360465 3978 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
LIG3P49916 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
LIG3P49916 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
LIG3P49916 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
LIG3P49916 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC6.48□□□□□ -1.37
LIG3P49916 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.48□□□□□ -1.37
LIG3P49916 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
LIG3P49916 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC6.48□□□□□ -1.37
LIG3P49916 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC6.48□□□□□ -1.37
LIG3P49916 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
LIG3P49916 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC6.48□□□□□ -1.37
LIG3P49916 CYP3A5-201ENST00000222982 1720 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
LIG3P49916 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC6.47□□□□□ -1.37
LIG3P49916 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
LIG3P49916 ZFP62-201ENST00000502412 3415 ntAPPRIS P1 TSL 2 BASIC6.47□□□□□ -1.37
LIG3P49916 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
LIG3P49916 SAMD3-205ENST00000457563 1877 ntTSL 2 BASIC6.47□□□□□ -1.37
LIG3P49916 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC6.47□□□□□ -1.37
LIG3P49916 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC6.47□□□□□ -1.37
LIG3P49916 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
LIG3P49916 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC6.47□□□□□ -1.37
LIG3P49916 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC6.47□□□□□ -1.37
LIG3P49916 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
LIG3P49916 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
LIG3P49916 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC6.47□□□□□ -1.37
LIG3P49916 SNORD35A-201ENST00000363389 86 ntBASIC6.47□□□□□ -1.37
LIG3P49916 RNA5-8SP5-201ENST00000365304 152 ntBASIC6.47□□□□□ -1.37
LIG3P49916 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC6.47□□□□□ -1.37
LIG3P49916 TINAG-203ENST00000370869 782 ntTSL 3 BASIC6.47□□□□□ -1.37
LIG3P49916 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC6.47□□□□□ -1.37
LIG3P49916 AL391419.1-201ENST00000398901 1275 ntBASIC6.47□□□□□ -1.37
LIG3P49916 AL023284.3-201ENST00000407767 334 ntBASIC6.47□□□□□ -1.37
LIG3P49916 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC6.47□□□□□ -1.37
LIG3P49916 AL139158.1-201ENST00000424719 340 ntBASIC6.47□□□□□ -1.37
LIG3P49916 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC6.47□□□□□ -1.37
LIG3P49916 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC6.47□□□□□ -1.37
LIG3P49916 VN1R20P-201ENST00000425215 966 ntBASIC6.47□□□□□ -1.37
LIG3P49916 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC6.47□□□□□ -1.37
LIG3P49916 AC005532.1-201ENST00000430266 471 ntTSL 5 BASIC6.47□□□□□ -1.37
LIG3P49916 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
LIG3P49916 VN1R10P-201ENST00000447106 875 ntBASIC6.47□□□□□ -1.37
LIG3P49916 VN1R34P-201ENST00000447387 883 ntBASIC6.47□□□□□ -1.37
LIG3P49916 WASF1P1-201ENST00000447560 1131 ntBASIC6.47□□□□□ -1.37
LIG3P49916 RPS27AP15-201ENST00000447672 466 ntBASIC6.47□□□□□ -1.37
LIG3P49916 EEF1B2P3-201ENST00000447718 678 ntBASIC6.47□□□□□ -1.37
LIG3P49916 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC6.47□□□□□ -1.37
LIG3P49916 RPL7P31-201ENST00000450192 724 ntBASIC6.47□□□□□ -1.37
LIG3P49916 AC211433.1-201ENST00000450426 686 ntTSL 4 BASIC6.47□□□□□ -1.37
LIG3P49916 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC6.47□□□□□ -1.37
LIG3P49916 SNRPFP4-201ENST00000456366 242 ntBASIC6.47□□□□□ -1.37
LIG3P49916 AP000797.1-201ENST00000478870 387 ntBASIC6.47□□□□□ -1.37
LIG3P49916 AL358832.1-201ENST00000497800 389 ntBASIC6.47□□□□□ -1.37
LIG3P49916 AC110011.1-201ENST00000518260 582 ntTSL 3 BASIC6.47□□□□□ -1.37
LIG3P49916 AC018442.2-201ENST00000523658 648 ntTSL 3 BASIC6.47□□□□□ -1.37
LIG3P49916 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC6.47□□□□□ -1.37
LIG3P49916 AP000593.3-201ENST00000546065 578 ntTSL 2 BASIC6.47□□□□□ -1.37
LIG3P49916 AC004217.3-201ENST00000551552 878 ntBASIC6.47□□□□□ -1.37
LIG3P49916 NPM1P47-201ENST00000560843 856 ntBASIC6.47□□□□□ -1.37
LIG3P49916 KPNA2P3-201ENST00000584190 848 ntBASIC6.47□□□□□ -1.37
LIG3P49916 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC6.47□□□□□ -1.37
LIG3P49916 AC026898.1-201ENST00000586404 571 ntBASIC6.47□□□□□ -1.37
LIG3P49916 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
LIG3P49916 AL137072.1-201ENST00000603444 466 ntBASIC6.47□□□□□ -1.37
LIG3P49916 AL354760.1-201ENST00000608357 643 ntBASIC6.47□□□□□ -1.37
LIG3P49916 AL159169.3-201ENST00000608871 561 ntBASIC6.47□□□□□ -1.37
LIG3P49916 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC6.47□□□□□ -1.37
LIG3P49916 AL135999.3-201ENST00000610501 812 ntBASIC6.47□□□□□ -1.37
LIG3P49916 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC6.47□□□□□ -1.37
LIG3P49916 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC6.47□□□□□ -1.37
LIG3P49916 AL356321.1-201ENST00000621360 228 ntBASIC6.47□□□□□ -1.37
LIG3P49916 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
LIG3P49916 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC6.47□□□□□ -1.37
LIG3P49916 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC6.47□□□□□ -1.37
LIG3P49916 AC015689.2-201ENST00000528172 1738 ntBASIC6.47□□□□□ -1.37
LIG3P49916 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
LIG3P49916 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
LIG3P49916 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC6.47□□□□□ -1.37
LIG3P49916 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC6.47□□□□□ -1.37
LIG3P49916 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC6.46□□□□□ -1.37
LIG3P49916 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC6.46□□□□□ -1.37
LIG3P49916 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC6.46□□□□□ -1.37
LIG3P49916 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC6.46□□□□□ -1.37
LIG3P49916 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.37
LIG3P49916 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
LIG3P49916 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC6.46□□□□□ -1.37
LIG3P49916 ELF2P3-201ENST00000445099 1506 ntBASIC6.46□□□□□ -1.37
LIG3P49916 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
LIG3P49916 ASNSP1-204ENST00000641977 1664 ntBASIC6.46□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 120.2 ms