Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC5.86□□□□□ -1.47
HOXC9P31274 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC5.86□□□□□ -1.47
HOXC9P31274 AC006116.5-201ENST00000591936 559 ntBASIC5.86□□□□□ -1.47
HOXC9P31274 AL161729.3-201ENST00000603533 673 ntBASIC5.86□□□□□ -1.47
HOXC9P31274 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
HOXC9P31274 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC5.86□□□□□ -1.47
HOXC9P31274 AC104307.1-201ENST00000616142 196 ntBASIC5.86□□□□□ -1.47
HOXC9P31274 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC5.86□□□□□ -1.47
HOXC9P31274 AL445363.3-201ENST00000623080 671 ntBASIC5.86□□□□□ -1.47
HOXC9P31274 AC073592.7-201ENST00000623659 507 ntBASIC5.86□□□□□ -1.47
HOXC9P31274 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC5.86□□□□□ -1.47
HOXC9P31274 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
HOXC9P31274 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC5.86□□□□□ -1.47
HOXC9P31274 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
HOXC9P31274 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC5.86□□□□□ -1.47
HOXC9P31274 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
HOXC9P31274 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
HOXC9P31274 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
HOXC9P31274 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC5.85□□□□□ -1.47
HOXC9P31274 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
HOXC9P31274 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
HOXC9P31274 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
HOXC9P31274 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
HOXC9P31274 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC5.85□□□□□ -1.47
HOXC9P31274 AL929601.4-201ENST00000613011 1341 ntBASIC5.85□□□□□ -1.47
HOXC9P31274 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
HOXC9P31274 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC5.85□□□□□ -1.47
HOXC9P31274 EI24P3-201ENST00000399046 1062 ntBASIC5.85□□□□□ -1.47
HOXC9P31274 NACAP7-201ENST00000407371 609 ntBASIC5.85□□□□□ -1.47
HOXC9P31274 RAB9AP4-201ENST00000415230 609 ntBASIC5.85□□□□□ -1.47
HOXC9P31274 AL356095.1-201ENST00000417217 199 ntBASIC5.85□□□□□ -1.47
HOXC9P31274 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5.85□□□□□ -1.47
HOXC9P31274 RCC2P2-201ENST00000422174 918 ntBASIC5.85□□□□□ -1.47
HOXC9P31274 MTATP6P11-201ENST00000428071 670 ntBASIC5.85□□□□□ -1.47
HOXC9P31274 RPL21P91-201ENST00000429231 479 ntBASIC5.85□□□□□ -1.47
HOXC9P31274 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC5.85□□□□□ -1.47
HOXC9P31274 AC093815.1-201ENST00000508637 280 ntBASIC5.85□□□□□ -1.47
HOXC9P31274 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC5.85□□□□□ -1.47
HOXC9P31274 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC5.85□□□□□ -1.47
HOXC9P31274 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC5.85□□□□□ -1.47
HOXC9P31274 EIF4A2P3-201ENST00000525903 1055 ntBASIC5.85□□□□□ -1.47
HOXC9P31274 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC5.85□□□□□ -1.47
HOXC9P31274 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HOXC9P31274 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC5.85□□□□□ -1.47
HOXC9P31274 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC5.85□□□□□ -1.47
HOXC9P31274 AC022916.3-201ENST00000592961 742 ntBASIC5.85□□□□□ -1.47
HOXC9P31274 MIR6867-201ENST00000610636 67 ntBASIC5.85□□□□□ -1.47
HOXC9P31274 AL392048.1-201ENST00000613946 534 ntBASIC5.85□□□□□ -1.47
HOXC9P31274 AP003400.6-201ENST00000624698 740 ntBASIC5.85□□□□□ -1.47
HOXC9P31274 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC5.85□□□□□ -1.47
HOXC9P31274 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HOXC9P31274 NXPH1-205ENST00000602349 1953 ntBASIC5.85□□□□□ -1.47
HOXC9P31274 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC5.85□□□□□ -1.47
HOXC9P31274 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
HOXC9P31274 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
HOXC9P31274 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
HOXC9P31274 ASNSP1-204ENST00000641977 1664 ntBASIC5.85□□□□□ -1.47
HOXC9P31274 MUC2-202ENST00000613187 4845 ntBASIC5.85□□□□□ -1.47
HOXC9P31274 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.47
HOXC9P31274 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC5.84□□□□□ -1.47
HOXC9P31274 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HOXC9P31274 RNU1-63P-201ENST00000383902 164 ntBASIC5.84□□□□□ -1.47
HOXC9P31274 RPL36AP36-201ENST00000418616 301 ntBASIC5.84□□□□□ -1.47
HOXC9P31274 AL157831.1-201ENST00000426134 473 ntBASIC5.84□□□□□ -1.47
HOXC9P31274 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC5.84□□□□□ -1.47
HOXC9P31274 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC5.84□□□□□ -1.47
HOXC9P31274 TCEA1P3-201ENST00000443005 880 ntBASIC5.84□□□□□ -1.47
HOXC9P31274 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC5.84□□□□□ -1.47
HOXC9P31274 ATP1B1P1-201ENST00000509767 915 ntBASIC5.84□□□□□ -1.47
HOXC9P31274 RNA5SP446-201ENST00000515955 82 ntBASIC5.84□□□□□ -1.47
HOXC9P31274 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC5.84□□□□□ -1.47
HOXC9P31274 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC5.84□□□□□ -1.47
HOXC9P31274 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC5.84□□□□□ -1.47
HOXC9P31274 AC034105.4-201ENST00000568304 277 ntBASIC5.84□□□□□ -1.47
HOXC9P31274 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC5.84□□□□□ -1.47
HOXC9P31274 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC5.84□□□□□ -1.47
HOXC9P31274 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC5.84□□□□□ -1.47
HOXC9P31274 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC5.84□□□□□ -1.47
HOXC9P31274 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC5.84□□□□□ -1.47
HOXC9P31274 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
HOXC9P31274 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.47
HOXC9P31274 TOPORSLP1-201ENST00000467693 2102 ntBASIC5.84□□□□□ -1.47
HOXC9P31274 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC5.84□□□□□ -1.47
HOXC9P31274 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HOXC9P31274 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
HOXC9P31274 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HOXC9P31274 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.48
HOXC9P31274 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC5.84□□□□□ -1.48
HOXC9P31274 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
HOXC9P31274 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.48
HOXC9P31274 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HOXC9P31274 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
HOXC9P31274 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC5.83□□□□□ -1.48
HOXC9P31274 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
HOXC9P31274 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
HOXC9P31274 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
HOXC9P31274 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
HOXC9P31274 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC5.83□□□□□ -1.48
HOXC9P31274 AL139039.2-201ENST00000407436 479 ntBASIC5.83□□□□□ -1.48
HOXC9P31274 EIF4A1P3-201ENST00000411521 244 ntBASIC5.83□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms