Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.92□□□□□ -1.46
SMARCA1P28370 AC138832.1-201ENST00000522871 556 ntBASIC5.92□□□□□ -1.46
SMARCA1P28370 AC011611.5-201ENST00000552477 578 ntBASIC5.92□□□□□ -1.46
SMARCA1P28370 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC5.92□□□□□ -1.46
SMARCA1P28370 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC5.92□□□□□ -1.46
SMARCA1P28370 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC5.92□□□□□ -1.46
SMARCA1P28370 AC018618.2-201ENST00000604770 446 ntBASIC5.92□□□□□ -1.46
SMARCA1P28370 AC079610.2-201ENST00000604818 690 ntBASIC5.92□□□□□ -1.46
SMARCA1P28370 AC211433.2-201ENST00000608433 387 ntBASIC5.92□□□□□ -1.46
SMARCA1P28370 AC021755.4-201ENST00000616620 456 ntBASIC5.92□□□□□ -1.46
SMARCA1P28370 AC011815.3-201ENST00000624194 473 ntBASIC5.92□□□□□ -1.46
SMARCA1P28370 TEX41-254ENST00000626394 423 ntTSL 5 BASIC5.92□□□□□ -1.46
SMARCA1P28370 AC139713.2-210ENST00000641741 992 ntBASIC5.92□□□□□ -1.46
SMARCA1P28370 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC5.92□□□□□ -1.46
SMARCA1P28370 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.92□□□□□ -1.46
SMARCA1P28370 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC5.92□□□□□ -1.46
SMARCA1P28370 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC5.92□□□□□ -1.46
SMARCA1P28370 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
SMARCA1P28370 AC093775.1-201ENST00000624154 1868 ntBASIC5.92□□□□□ -1.46
SMARCA1P28370 CASC19-284ENST00000642142 1868 ntBASIC5.92□□□□□ -1.46
SMARCA1P28370 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
SMARCA1P28370 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SMARCA1P28370 AC099786.3-201ENST00000565735 1410 ntBASIC5.91□□□□□ -1.46
SMARCA1P28370 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SMARCA1P28370 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SMARCA1P28370 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SMARCA1P28370 OFD1P9Y-201ENST00000417699 1491 ntBASIC5.91□□□□□ -1.46
SMARCA1P28370 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SMARCA1P28370 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SMARCA1P28370 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SMARCA1P28370 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SMARCA1P28370 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
SMARCA1P28370 RNU4-28P-201ENST00000364739 141 ntBASIC5.91□□□□□ -1.46
SMARCA1P28370 SNORA2.3-201ENST00000383920 135 ntBASIC5.91□□□□□ -1.46
SMARCA1P28370 MTCO2P31-201ENST00000402702 684 ntBASIC5.91□□□□□ -1.46
SMARCA1P28370 RPL7P27-201ENST00000403775 720 ntBASIC5.91□□□□□ -1.46
SMARCA1P28370 RNA5SP498-201ENST00000411342 120 ntBASIC5.91□□□□□ -1.46
SMARCA1P28370 RPL22P18-201ENST00000417197 377 ntBASIC5.91□□□□□ -1.46
SMARCA1P28370 MTCO3P4-201ENST00000419236 787 ntBASIC5.91□□□□□ -1.46
SMARCA1P28370 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC5.91□□□□□ -1.46
SMARCA1P28370 HSFY3P-201ENST00000444242 1191 ntBASIC5.91□□□□□ -1.46
SMARCA1P28370 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC5.91□□□□□ -1.46
SMARCA1P28370 SEPT14P24-201ENST00000447236 180 ntBASIC5.91□□□□□ -1.46
SMARCA1P28370 AL354714.3-201ENST00000447284 493 ntBASIC5.91□□□□□ -1.46
SMARCA1P28370 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC5.91□□□□□ -1.46
SMARCA1P28370 AC096741.1-201ENST00000472250 846 ntBASIC5.91□□□□□ -1.46
SMARCA1P28370 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC5.91□□□□□ -1.46
SMARCA1P28370 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC5.91□□□□□ -1.46
SMARCA1P28370 HMGN2P25-201ENST00000486956 268 ntBASIC5.91□□□□□ -1.46
SMARCA1P28370 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC5.91□□□□□ -1.46
SMARCA1P28370 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC5.91□□□□□ -1.46
SMARCA1P28370 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC5.91□□□□□ -1.46
SMARCA1P28370 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.91□□□□□ -1.46
SMARCA1P28370 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC5.91□□□□□ -1.46
SMARCA1P28370 OR7E128P-201ENST00000532736 1024 ntBASIC5.91□□□□□ -1.46
SMARCA1P28370 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC5.91□□□□□ -1.46
SMARCA1P28370 AL390334.1-201ENST00000556395 450 ntBASIC5.91□□□□□ -1.46
SMARCA1P28370 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC5.91□□□□□ -1.46
SMARCA1P28370 AC023824.3-201ENST00000569003 562 ntBASIC5.91□□□□□ -1.46
SMARCA1P28370 AC005412.1-201ENST00000580812 1049 ntBASIC5.91□□□□□ -1.46
SMARCA1P28370 AP002906.1-201ENST00000603405 233 ntBASIC5.91□□□□□ -1.46
SMARCA1P28370 AC011374.2-201ENST00000607135 526 ntBASIC5.91□□□□□ -1.46
SMARCA1P28370 OR2BH1P-201ENST00000608850 864 ntBASIC5.91□□□□□ -1.46
SMARCA1P28370 AC010435.1-201ENST00000623353 1177 ntBASIC5.91□□□□□ -1.46
SMARCA1P28370 AC004777.1-201ENST00000624317 287 ntBASIC5.91□□□□□ -1.46
SMARCA1P28370 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
SMARCA1P28370 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC5.91□□□□□ -1.46
SMARCA1P28370 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC5.91□□□□□ -1.46
SMARCA1P28370 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
SMARCA1P28370 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SMARCA1P28370 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SMARCA1P28370 SUCLA2P2-201ENST00000417269 1309 ntBASIC5.91□□□□□ -1.46
SMARCA1P28370 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
SMARCA1P28370 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SMARCA1P28370 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
SMARCA1P28370 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.91□□□□□ -1.46
SMARCA1P28370 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SMARCA1P28370 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.91□□□□□ -1.46
SMARCA1P28370 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
SMARCA1P28370 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
SMARCA1P28370 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.46
SMARCA1P28370 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
SMARCA1P28370 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
SMARCA1P28370 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SMARCA1P28370 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
SMARCA1P28370 MIR142-201ENST00000384835 87 ntBASIC5.9□□□□□ -1.46
SMARCA1P28370 AL645927.1-201ENST00000396783 406 ntBASIC5.9□□□□□ -1.46
SMARCA1P28370 RPL12P9-201ENST00000412942 488 ntBASIC5.9□□□□□ -1.46
SMARCA1P28370 HMGB3P31-201ENST00000413333 595 ntBASIC5.9□□□□□ -1.46
SMARCA1P28370 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC5.9□□□□□ -1.46
SMARCA1P28370 FO393419.3-201ENST00000428741 282 ntBASIC5.9□□□□□ -1.46
SMARCA1P28370 RPL7P34-201ENST00000433316 712 ntBASIC5.9□□□□□ -1.46
SMARCA1P28370 RPL5P25-201ENST00000441148 775 ntBASIC5.9□□□□□ -1.46
SMARCA1P28370 AL035551.1-201ENST00000446931 348 ntBASIC5.9□□□□□ -1.46
SMARCA1P28370 AC004980.3-201ENST00000447046 365 ntBASIC5.9□□□□□ -1.46
SMARCA1P28370 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC5.9□□□□□ -1.46
SMARCA1P28370 PTGES3P5-201ENST00000455109 434 ntBASIC5.9□□□□□ -1.46
SMARCA1P28370 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC5.9□□□□□ -1.46
SMARCA1P28370 RN7SL329P-201ENST00000467740 299 ntBASIC5.9□□□□□ -1.46
SMARCA1P28370 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC5.9□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms