Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC069307.1-201ENST00000602820 447 ntBASIC6.2□□□□□ -1.42
COL6A1P12109 AC004987.4-201ENST00000603383 338 ntBASIC6.2□□□□□ -1.42
COL6A1P12109 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC6.2□□□□□ -1.42
COL6A1P12109 AL163642.2-201ENST00000604722 1019 ntBASIC6.2□□□□□ -1.42
COL6A1P12109 AC087783.2-201ENST00000605070 562 ntBASIC6.2□□□□□ -1.42
COL6A1P12109 AP000255.1-201ENST00000610276 676 ntBASIC6.2□□□□□ -1.42
COL6A1P12109 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC6.2□□□□□ -1.42
COL6A1P12109 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC6.2□□□□□ -1.42
COL6A1P12109 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC6.2□□□□□ -1.42
COL6A1P12109 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
COL6A1P12109 AC079248.2-201ENST00000623779 326 ntBASIC6.2□□□□□ -1.42
COL6A1P12109 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC6.2□□□□□ -1.42
COL6A1P12109 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
COL6A1P12109 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
COL6A1P12109 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC6.2□□□□□ -1.42
COL6A1P12109 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC6.2□□□□□ -1.42
COL6A1P12109 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
COL6A1P12109 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
COL6A1P12109 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL6A1P12109 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL6A1P12109 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
COL6A1P12109 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC6.19□□□□□ -1.42
COL6A1P12109 ZNF849P-201ENST00000594711 1566 ntBASIC6.19□□□□□ -1.42
COL6A1P12109 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC6.19□□□□□ -1.42
COL6A1P12109 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL6A1P12109 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL6A1P12109 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC6.19□□□□□ -1.42
COL6A1P12109 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
COL6A1P12109 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC6.19□□□□□ -1.42
COL6A1P12109 SNORA70H-201ENST00000383910 135 ntBASIC6.19□□□□□ -1.42
COL6A1P12109 RNU1-74P-201ENST00000384108 171 ntBASIC6.19□□□□□ -1.42
COL6A1P12109 SNORA70J-201ENST00000384182 135 ntBASIC6.19□□□□□ -1.42
COL6A1P12109 RNU6-31P-201ENST00000384388 108 ntBASIC6.19□□□□□ -1.42
COL6A1P12109 MIR551A-201ENST00000385042 96 ntBASIC6.19□□□□□ -1.42
COL6A1P12109 NCSTNP1-201ENST00000406229 144 ntBASIC6.19□□□□□ -1.42
COL6A1P12109 AL356967.1-201ENST00000406305 431 ntBASIC6.19□□□□□ -1.42
COL6A1P12109 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC6.19□□□□□ -1.42
COL6A1P12109 AC092638.1-201ENST00000411966 1275 ntBASIC6.19□□□□□ -1.42
COL6A1P12109 AC004022.2-201ENST00000413824 193 ntBASIC6.19□□□□□ -1.42
COL6A1P12109 ZNF736P2Y-201ENST00000416040 1279 ntBASIC6.19□□□□□ -1.42
COL6A1P12109 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC6.19□□□□□ -1.42
COL6A1P12109 AC011233.1-201ENST00000422812 283 ntBASIC6.19□□□□□ -1.42
COL6A1P12109 ZDHHC20P2-201ENST00000424108 429 ntBASIC6.19□□□□□ -1.42
COL6A1P12109 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC6.19□□□□□ -1.42
COL6A1P12109 NMNAT1P2-201ENST00000435192 860 ntBASIC6.19□□□□□ -1.42
COL6A1P12109 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC6.19□□□□□ -1.42
COL6A1P12109 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC6.19□□□□□ -1.42
COL6A1P12109 AC092393.1-201ENST00000439625 742 ntBASIC6.19□□□□□ -1.42
COL6A1P12109 MTND2P20-201ENST00000440805 661 ntBASIC6.19□□□□□ -1.42
COL6A1P12109 AL360221.1-201ENST00000445989 335 ntBASIC6.19□□□□□ -1.42
COL6A1P12109 OR52J1P-201ENST00000450596 932 ntBASIC6.19□□□□□ -1.42
COL6A1P12109 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC6.19□□□□□ -1.42
COL6A1P12109 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC6.19□□□□□ -1.42
COL6A1P12109 AC105384.2-201ENST00000508433 640 ntBASIC6.19□□□□□ -1.42
COL6A1P12109 AC093815.1-201ENST00000508637 280 ntBASIC6.19□□□□□ -1.42
COL6A1P12109 AC119751.1-201ENST00000513357 765 ntBASIC6.19□□□□□ -1.42
COL6A1P12109 UBE2Q2P10-201ENST00000514854 900 ntBASIC6.19□□□□□ -1.42
COL6A1P12109 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
COL6A1P12109 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC6.19□□□□□ -1.42
COL6A1P12109 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC6.19□□□□□ -1.42
COL6A1P12109 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC6.19□□□□□ -1.42
COL6A1P12109 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC6.19□□□□□ -1.42
COL6A1P12109 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC6.19□□□□□ -1.42
COL6A1P12109 CDC42EP3P1-201ENST00000601004 764 ntBASIC6.19□□□□□ -1.42
COL6A1P12109 NANOGP3-201ENST00000605855 286 ntBASIC6.19□□□□□ -1.42
COL6A1P12109 AC013468.1-201ENST00000608680 598 ntBASIC6.19□□□□□ -1.42
COL6A1P12109 AC103591.3-201ENST00000608684 209 ntBASIC6.19□□□□□ -1.42
COL6A1P12109 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC6.19□□□□□ -1.42
COL6A1P12109 AC109583.2-201ENST00000617367 129 ntBASIC6.19□□□□□ -1.42
COL6A1P12109 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC6.19□□□□□ -1.42
COL6A1P12109 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
COL6A1P12109 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC6.19□□□□□ -1.42
COL6A1P12109 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL6A1P12109 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC6.19□□□□□ -1.42
COL6A1P12109 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL6A1P12109 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
COL6A1P12109 AC114947.2-201ENST00000565748 2125 ntBASIC6.19□□□□□ -1.42
COL6A1P12109 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC6.18□□□□□ -1.42
COL6A1P12109 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC6.18□□□□□ -1.42
COL6A1P12109 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL6A1P12109 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
COL6A1P12109 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL6A1P12109 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL6A1P12109 MTND5P29-201ENST00000458676 1807 ntBASIC6.18□□□□□ -1.42
COL6A1P12109 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC6.18□□□□□ -1.42
COL6A1P12109 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC6.18□□□□□ -1.42
COL6A1P12109 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL6A1P12109 CGA-201ENST00000369582 729 ntTSL 5 BASIC6.18□□□□□ -1.42
COL6A1P12109 SNORA51.8-201ENST00000384234 132 ntBASIC6.18□□□□□ -1.42
COL6A1P12109 U3.23-201ENST00000391132 200 ntBASIC6.18□□□□□ -1.42
COL6A1P12109 RNU6ATAC21P-201ENST00000408656 126 ntBASIC6.18□□□□□ -1.42
COL6A1P12109 MOB4-205ENST00000409916 829 ntTSL 3 BASIC6.18□□□□□ -1.42
COL6A1P12109 RNU2-50P-201ENST00000410494 143 ntBASIC6.18□□□□□ -1.42
COL6A1P12109 RNA5SP498-201ENST00000411342 120 ntBASIC6.18□□□□□ -1.42
COL6A1P12109 AF274854.1-201ENST00000413236 615 ntBASIC6.18□□□□□ -1.42
COL6A1P12109 RAD23BP2-201ENST00000416003 1207 ntBASIC6.18□□□□□ -1.42
COL6A1P12109 MTND4LP11-201ENST00000422184 280 ntBASIC6.18□□□□□ -1.42
COL6A1P12109 AC093655.2-201ENST00000425735 631 ntBASIC6.18□□□□□ -1.42
COL6A1P12109 OR5BE1P-201ENST00000425977 939 ntBASIC6.18□□□□□ -1.42
COL6A1P12109 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC6.18□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms