Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 MTND4LP14-201ENST00000429447 288 ntBASIC4.43□□□□□ -1.7
HOXD4P09016 BX323845.1-201ENST00000432417 179 ntBASIC4.43□□□□□ -1.7
HOXD4P09016 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC4.43□□□□□ -1.7
HOXD4P09016 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC4.43□□□□□ -1.7
HOXD4P09016 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC4.43□□□□□ -1.7
HOXD4P09016 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC4.43□□□□□ -1.7
HOXD4P09016 AL353718.1-201ENST00000451028 517 ntBASIC4.43□□□□□ -1.7
HOXD4P09016 HMGB1P4-201ENST00000455362 567 ntBASIC4.43□□□□□ -1.7
HOXD4P09016 EIF4A2P2-201ENST00000455776 1070 ntBASIC4.43□□□□□ -1.7
HOXD4P09016 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC4.43□□□□□ -1.7
HOXD4P09016 SSR3-206ENST00000476217 807 ntTSL 3 BASIC4.43□□□□□ -1.7
HOXD4P09016 DEFB109F-201ENST00000491870 277 ntBASIC4.43□□□□□ -1.7
HOXD4P09016 MTND3P24-201ENST00000506306 329 ntBASIC4.43□□□□□ -1.7
HOXD4P09016 Y_RNA.719-201ENST00000517156 106 ntBASIC4.43□□□□□ -1.7
HOXD4P09016 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXD4P09016 OR7E10P-201ENST00000526420 991 ntBASIC4.43□□□□□ -1.7
HOXD4P09016 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC4.43□□□□□ -1.7
HOXD4P09016 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC4.43□□□□□ -1.7
HOXD4P09016 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC4.43□□□□□ -1.7
HOXD4P09016 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC4.43□□□□□ -1.7
HOXD4P09016 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC4.43□□□□□ -1.7
HOXD4P09016 AC122134.1-201ENST00000565664 1104 ntBASIC4.43□□□□□ -1.7
HOXD4P09016 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXD4P09016 MYLK-221ENST00000583087 678 ntTSL 4 BASIC4.43□□□□□ -1.7
HOXD4P09016 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXD4P09016 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXD4P09016 AC020910.3-201ENST00000603701 874 ntBASIC4.43□□□□□ -1.7
HOXD4P09016 OR4H6P-202ENST00000603819 340 ntBASIC4.43□□□□□ -1.7
HOXD4P09016 AC019206.1-201ENST00000621938 425 ntBASIC4.43□□□□□ -1.7
HOXD4P09016 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.43□□□□□ -1.7
HOXD4P09016 AC067931.1-201ENST00000624190 671 ntBASIC4.43□□□□□ -1.7
HOXD4P09016 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXD4P09016 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.43□□□□□ -1.7
HOXD4P09016 AL133268.1-201ENST00000405676 1401 ntBASIC4.43□□□□□ -1.7
HOXD4P09016 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
HOXD4P09016 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC4.43□□□□□ -1.7
HOXD4P09016 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXD4P09016 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC4.43□□□□□ -1.7
HOXD4P09016 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.43□□□□□ -1.7
HOXD4P09016 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXD4P09016 KPNA2P2-201ENST00000419546 1489 ntBASIC4.43□□□□□ -1.7
HOXD4P09016 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.43□□□□□ -1.7
HOXD4P09016 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
HOXD4P09016 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HOXD4P09016 AL512283.1-201ENST00000606756 1384 ntBASIC4.42□□□□□ -1.7
HOXD4P09016 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.42□□□□□ -1.7
HOXD4P09016 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HOXD4P09016 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.42□□□□□ -1.7
HOXD4P09016 AP000542.2-201ENST00000623199 6179 ntBASIC4.42□□□□□ -1.7
HOXD4P09016 AC018529.3-201ENST00000624212 2254 ntBASIC4.42□□□□□ -1.7
HOXD4P09016 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
HOXD4P09016 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HOXD4P09016 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
HOXD4P09016 RN7SKP224-201ENST00000364140 325 ntBASIC4.42□□□□□ -1.7
HOXD4P09016 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
HOXD4P09016 ATP5F1P2-201ENST00000398143 760 ntBASIC4.42□□□□□ -1.7
HOXD4P09016 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HOXD4P09016 RN7SKP100-201ENST00000411258 284 ntBASIC4.42□□□□□ -1.7
HOXD4P09016 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC4.42□□□□□ -1.7
HOXD4P09016 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
HOXD4P09016 BX510359.2-201ENST00000417920 305 ntBASIC4.42□□□□□ -1.7
HOXD4P09016 AC009480.2-201ENST00000422916 432 ntBASIC4.42□□□□□ -1.7
HOXD4P09016 NRBF2P3-201ENST00000432731 865 ntBASIC4.42□□□□□ -1.7
HOXD4P09016 AL359265.2-201ENST00000434367 631 ntBASIC4.42□□□□□ -1.7
HOXD4P09016 AC046176.1-201ENST00000435260 1170 ntBASIC4.42□□□□□ -1.7
HOXD4P09016 AC074367.1-201ENST00000438685 1125 ntBASIC4.42□□□□□ -1.7
HOXD4P09016 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.42□□□□□ -1.7
HOXD4P09016 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4.42□□□□□ -1.7
HOXD4P09016 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC4.42□□□□□ -1.7
HOXD4P09016 MTND5P8-201ENST00000449817 1083 ntBASIC4.42□□□□□ -1.7
HOXD4P09016 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC4.42□□□□□ -1.7
HOXD4P09016 AURKAPS2-201ENST00000454983 333 ntBASIC4.42□□□□□ -1.7
HOXD4P09016 RPS5P7-201ENST00000456664 608 ntBASIC4.42□□□□□ -1.7
HOXD4P09016 AC068587.1-201ENST00000483613 781 ntBASIC4.42□□□□□ -1.7
HOXD4P09016 AC116562.1-201ENST00000485355 781 ntBASIC4.42□□□□□ -1.7
HOXD4P09016 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.42□□□□□ -1.7
HOXD4P09016 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC4.42□□□□□ -1.7
HOXD4P09016 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC4.42□□□□□ -1.7
HOXD4P09016 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC4.42□□□□□ -1.7
HOXD4P09016 AC027281.1-201ENST00000574178 758 ntBASIC4.42□□□□□ -1.7
HOXD4P09016 MIR5096-201ENST00000583713 70 ntBASIC4.42□□□□□ -1.7
HOXD4P09016 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC4.42□□□□□ -1.7
HOXD4P09016 AC098483.2-201ENST00000603158 454 ntBASIC4.42□□□□□ -1.7
HOXD4P09016 AC104687.2-201ENST00000604442 342 ntBASIC4.42□□□□□ -1.7
HOXD4P09016 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC4.42□□□□□ -1.7
HOXD4P09016 AC135803.1-201ENST00000608748 565 ntBASIC4.42□□□□□ -1.7
HOXD4P09016 AL049794.2-201ENST00000616301 365 ntBASIC4.42□□□□□ -1.7
HOXD4P09016 AC108359.1-201ENST00000616451 1211 ntBASIC4.42□□□□□ -1.7
HOXD4P09016 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC4.42□□□□□ -1.7
HOXD4P09016 AC006840.1-201ENST00000623069 542 ntBASIC4.42□□□□□ -1.7
HOXD4P09016 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC4.42□□□□□ -1.7
HOXD4P09016 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.42□□□□□ -1.7
HOXD4P09016 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC4.42□□□□□ -1.7
HOXD4P09016 AL133243.3-201ENST00000617415 3004 ntBASIC4.42□□□□□ -1.7
HOXD4P09016 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.42□□□□□ -1.7
HOXD4P09016 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
HOXD4P09016 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.42□□□□□ -1.7
HOXD4P09016 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.41□□□□□ -1.7
HOXD4P09016 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HOXD4P09016 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 83.9 ms