Protein–RNA interactions for Protein: Q9P0L0

VAPA, Vesicle-associated membrane protein-associated protein A, humanhuman

Predictions only

Length 249 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VAPAQ9P0L0 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
VAPAQ9P0L0 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.22□□□□□ -1.73
VAPAQ9P0L0 AL590240.1-201ENST00000334118 313 ntBASIC4.22□□□□□ -1.73
VAPAQ9P0L0 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
VAPAQ9P0L0 RNA5SP507-201ENST00000363603 121 ntBASIC4.22□□□□□ -1.73
VAPAQ9P0L0 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
VAPAQ9P0L0 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
VAPAQ9P0L0 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC4.22□□□□□ -1.73
VAPAQ9P0L0 COX6B1P1-201ENST00000415962 213 ntBASIC4.22□□□□□ -1.73
VAPAQ9P0L0 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.22□□□□□ -1.73
VAPAQ9P0L0 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC4.22□□□□□ -1.73
VAPAQ9P0L0 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC4.22□□□□□ -1.73
VAPAQ9P0L0 HLA-N-201ENST00000437516 135 ntBASIC4.22□□□□□ -1.73
VAPAQ9P0L0 RPL23AP93-201ENST00000440847 484 ntBASIC4.22□□□□□ -1.73
VAPAQ9P0L0 AL357520.1-201ENST00000441557 453 ntBASIC4.22□□□□□ -1.73
VAPAQ9P0L0 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC4.22□□□□□ -1.73
VAPAQ9P0L0 AC012671.1-201ENST00000451912 203 ntBASIC4.22□□□□□ -1.73
VAPAQ9P0L0 AC006967.1-201ENST00000467608 589 ntBASIC4.22□□□□□ -1.73
VAPAQ9P0L0 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.22□□□□□ -1.73
VAPAQ9P0L0 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC4.22□□□□□ -1.73
VAPAQ9P0L0 RNU4-18P-201ENST00000516751 149 ntBASIC4.22□□□□□ -1.73
VAPAQ9P0L0 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC4.22□□□□□ -1.73
VAPAQ9P0L0 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC4.22□□□□□ -1.73
VAPAQ9P0L0 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC4.22□□□□□ -1.73
VAPAQ9P0L0 HMGB3P26-201ENST00000560051 582 ntBASIC4.22□□□□□ -1.73
VAPAQ9P0L0 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC4.22□□□□□ -1.73
VAPAQ9P0L0 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC4.22□□□□□ -1.73
VAPAQ9P0L0 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC4.22□□□□□ -1.73
VAPAQ9P0L0 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.22□□□□□ -1.73
VAPAQ9P0L0 MIR3667-201ENST00000581025 74 ntBASIC4.22□□□□□ -1.73
VAPAQ9P0L0 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.22□□□□□ -1.73
VAPAQ9P0L0 RPL27-207ENST00000590864 569 ntTSL 2 BASIC4.22□□□□□ -1.73
VAPAQ9P0L0 RPL26P30-202ENST00000602923 645 ntBASIC4.22□□□□□ -1.73
VAPAQ9P0L0 AC098935.2-201ENST00000604222 466 ntBASIC4.22□□□□□ -1.73
VAPAQ9P0L0 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.22□□□□□ -1.73
VAPAQ9P0L0 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC4.22□□□□□ -1.73
VAPAQ9P0L0 AC015908.5-201ENST00000623289 343 ntBASIC4.22□□□□□ -1.73
VAPAQ9P0L0 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.22□□□□□ -1.73
VAPAQ9P0L0 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.22□□□□□ -1.73
VAPAQ9P0L0 Z98755.1-201ENST00000407015 1384 ntBASIC4.22□□□□□ -1.73
VAPAQ9P0L0 MTND4P26-201ENST00000415971 1359 ntBASIC4.22□□□□□ -1.73
VAPAQ9P0L0 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
VAPAQ9P0L0 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.73
VAPAQ9P0L0 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC4.21□□□□□ -1.73
VAPAQ9P0L0 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
VAPAQ9P0L0 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.73
VAPAQ9P0L0 MTCO1P11-201ENST00000429111 1528 ntBASIC4.21□□□□□ -1.73
VAPAQ9P0L0 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC4.21□□□□□ -1.73
VAPAQ9P0L0 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
VAPAQ9P0L0 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.73
VAPAQ9P0L0 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
VAPAQ9P0L0 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
VAPAQ9P0L0 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
VAPAQ9P0L0 RN7SKP149-201ENST00000363008 344 ntBASIC4.21□□□□□ -1.74
VAPAQ9P0L0 SNORA71.2-201ENST00000364941 134 ntBASIC4.21□□□□□ -1.74
VAPAQ9P0L0 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC4.21□□□□□ -1.74
VAPAQ9P0L0 OR1F12-201ENST00000402365 945 ntBASIC4.21□□□□□ -1.74
VAPAQ9P0L0 NCSTNP1-201ENST00000406229 144 ntBASIC4.21□□□□□ -1.74
VAPAQ9P0L0 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.21□□□□□ -1.74
VAPAQ9P0L0 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.21□□□□□ -1.74
VAPAQ9P0L0 SLC9B1P4-201ENST00000421957 1288 ntBASIC4.21□□□□□ -1.74
VAPAQ9P0L0 ARAFP1-201ENST00000422172 605 ntBASIC4.21□□□□□ -1.74
VAPAQ9P0L0 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
VAPAQ9P0L0 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC4.21□□□□□ -1.74
VAPAQ9P0L0 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC4.21□□□□□ -1.74
VAPAQ9P0L0 MTND2P2-201ENST00000434633 945 ntBASIC4.21□□□□□ -1.74
VAPAQ9P0L0 YWHAZP2-201ENST00000440317 728 ntBASIC4.21□□□□□ -1.74
VAPAQ9P0L0 AC011753.3-201ENST00000443436 406 ntBASIC4.21□□□□□ -1.74
VAPAQ9P0L0 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC4.21□□□□□ -1.74
VAPAQ9P0L0 RPL23AP43-201ENST00000446445 471 ntBASIC4.21□□□□□ -1.74
VAPAQ9P0L0 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.21□□□□□ -1.74
VAPAQ9P0L0 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC4.21□□□□□ -1.74
VAPAQ9P0L0 RPL7AP6-201ENST00000477943 801 ntBASIC4.21□□□□□ -1.74
VAPAQ9P0L0 RN7SL808P-201ENST00000496066 299 ntBASIC4.21□□□□□ -1.74
VAPAQ9P0L0 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC4.21□□□□□ -1.74
VAPAQ9P0L0 AC113398.2-201ENST00000507630 558 ntBASIC4.21□□□□□ -1.74
VAPAQ9P0L0 CDV3-208ENST00000511392 554 ntTSL 5 BASIC4.21□□□□□ -1.74
VAPAQ9P0L0 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC4.21□□□□□ -1.74
VAPAQ9P0L0 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC4.21□□□□□ -1.74
VAPAQ9P0L0 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC4.21□□□□□ -1.74
VAPAQ9P0L0 AC069240.1-201ENST00000548774 375 ntBASIC4.21□□□□□ -1.74
VAPAQ9P0L0 HMGN2P6-201ENST00000551091 273 ntBASIC4.21□□□□□ -1.74
VAPAQ9P0L0 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC4.21□□□□□ -1.74
VAPAQ9P0L0 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC4.21□□□□□ -1.74
VAPAQ9P0L0 AC005034.4-201ENST00000603612 899 ntBASIC4.21□□□□□ -1.74
VAPAQ9P0L0 AL445222.1-201ENST00000607259 628 ntBASIC4.21□□□□□ -1.74
VAPAQ9P0L0 AL031666.3-201ENST00000609320 1006 ntBASIC4.21□□□□□ -1.74
VAPAQ9P0L0 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC4.21□□□□□ -1.74
VAPAQ9P0L0 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.21□□□□□ -1.74
VAPAQ9P0L0 OR2L1P-202ENST00000641567 1023 ntBASIC4.21□□□□□ -1.74
VAPAQ9P0L0 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
VAPAQ9P0L0 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
VAPAQ9P0L0 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
VAPAQ9P0L0 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
VAPAQ9P0L0 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.21□□□□□ -1.74
VAPAQ9P0L0 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
VAPAQ9P0L0 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
VAPAQ9P0L0 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
VAPAQ9P0L0 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
VAPAQ9P0L0 AC010928.1-201ENST00000592477 1447 ntBASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 113.5 ms