Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 WDR61-205ENST00000558459 884 ntTSL 3 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 AC093519.1-201ENST00000566109 298 ntBASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 AC090844.2-201ENST00000578802 436 ntTSL 4 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 MIR132-201ENST00000591554 101 ntBASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 AC073544.2-201ENST00000601155 540 ntBASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 RPL12P48-201ENST00000605620 304 ntBASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 AL139286.2-201ENST00000606838 396 ntBASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 uc_338.26-201ENST00000612659 160 ntBASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 AL021918.2-201ENST00000613415 194 ntBASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 MIR6861-201ENST00000618657 64 ntBASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 AL031667.3-201ENST00000620124 655 ntBASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 AC092656.1-203ENST00000624134 423 ntBASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 AL162377.2-201ENST00000624532 337 ntBASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 AC129915.3-201ENST00000634128 948 ntBASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 AC090582.1-201ENST00000636321 199 ntBASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 MTND4P34-201ENST00000572715 1371 ntBASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 AC092070.2-203ENST00000598377 3644 ntBASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 AC023490.2-201ENST00000359859 470 ntBASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 Y_RNA.408-201ENST00000383987 102 ntBASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 SNORD116-23-201ENST00000384645 92 ntBASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 RNU6-1151P-201ENST00000384684 107 ntBASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 AL121978.1-201ENST00000402778 359 ntBASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 AL121835.1-201ENST00000404250 354 ntBASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 RNU2-65P-201ENST00000410162 185 ntBASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 HMGN1P20-201ENST00000411849 300 ntBASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 AL354890.1-201ENST00000413730 346 ntBASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 MTCO3P41-201ENST00000414801 328 ntBASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 AC124944.2-201ENST00000429866 1242 ntBASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 PPIAP13-201ENST00000434706 478 ntBASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 NDUFS5P5-201ENST00000437256 321 ntBASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 AL137845.2-201ENST00000444292 988 ntBASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 SLC25A51P1-201ENST00000468432 871 ntBASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 SETP11-201ENST00000473027 690 ntBASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 MTCO2P32-201ENST00000514865 403 ntBASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 RNA5SP271-201ENST00000516700 88 ntBASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 AP000648.1-201ENST00000529682 397 ntBASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 PCNAP4-201ENST00000532690 730 ntBASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 AC068792.1-201ENST00000621354 417 ntBASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 AC074140.1-201ENST00000621617 208 ntBASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 TEX41-256ENST00000626411 368 ntTSL 5 BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 AC084035.1-201ENST00000634543 607 ntBASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 ATP5A1P1-201ENST00000454088 1321 ntBASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 AC092162.3-201ENST00000624511 1624 ntBASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 AC097461.1-201ENST00000568928 2821 ntBASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms