Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 MIR298-201ENST00000401212 88 ntBASIC4.68□□□□□ -1.66
VPS35Q96QK1 AL034374.1-201ENST00000406329 351 ntBASIC4.68□□□□□ -1.66
VPS35Q96QK1 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.68□□□□□ -1.66
VPS35Q96QK1 ZNF92P1Y-201ENST00000415010 1191 ntBASIC4.68□□□□□ -1.66
VPS35Q96QK1 FABP7P1-201ENST00000424004 391 ntBASIC4.68□□□□□ -1.66
VPS35Q96QK1 GTF2IP2-201ENST00000424290 697 ntBASIC4.68□□□□□ -1.66
VPS35Q96QK1 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC4.68□□□□□ -1.66
VPS35Q96QK1 AC007563.3-201ENST00000433233 371 ntBASIC4.68□□□□□ -1.66
VPS35Q96QK1 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC4.68□□□□□ -1.66
VPS35Q96QK1 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC4.68□□□□□ -1.66
VPS35Q96QK1 RPL36AP15-201ENST00000444514 266 ntBASIC4.68□□□□□ -1.66
VPS35Q96QK1 H2AFZP5-201ENST00000446960 382 ntBASIC4.68□□□□□ -1.66
VPS35Q96QK1 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC4.68□□□□□ -1.66
VPS35Q96QK1 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC4.68□□□□□ -1.66
VPS35Q96QK1 AK5-208ENST00000478255 556 ntTSL 2 BASIC4.68□□□□□ -1.66
VPS35Q96QK1 IGLV2-34-201ENST00000490007 283 ntBASIC4.68□□□□□ -1.66
VPS35Q96QK1 RNU2-30P-201ENST00000516209 141 ntBASIC4.68□□□□□ -1.66
VPS35Q96QK1 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.68□□□□□ -1.66
VPS35Q96QK1 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC4.68□□□□□ -1.66
VPS35Q96QK1 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.68□□□□□ -1.66
VPS35Q96QK1 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC4.68□□□□□ -1.66
VPS35Q96QK1 SULT1C2P2-201ENST00000562517 294 ntBASIC4.68□□□□□ -1.66
VPS35Q96QK1 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.68□□□□□ -1.66
VPS35Q96QK1 RN7SL690P-201ENST00000582087 240 ntBASIC4.68□□□□□ -1.66
VPS35Q96QK1 RPL27-207ENST00000590864 569 ntTSL 2 BASIC4.68□□□□□ -1.66
VPS35Q96QK1 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
VPS35Q96QK1 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
VPS35Q96QK1 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.68□□□□□ -1.66
VPS35Q96QK1 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
VPS35Q96QK1 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
VPS35Q96QK1 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
VPS35Q96QK1 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
VPS35Q96QK1 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.68□□□□□ -1.66
VPS35Q96QK1 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
VPS35Q96QK1 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
VPS35Q96QK1 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS35Q96QK1 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC4.67□□□□□ -1.66
VPS35Q96QK1 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.67□□□□□ -1.66
VPS35Q96QK1 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS35Q96QK1 AL445487.1-201ENST00000415694 1580 ntBASIC4.67□□□□□ -1.66
VPS35Q96QK1 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.67□□□□□ -1.66
VPS35Q96QK1 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS35Q96QK1 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC4.67□□□□□ -1.66
VPS35Q96QK1 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC4.67□□□□□ -1.66
VPS35Q96QK1 AC140479.3-201ENST00000418944 1126 ntBASIC4.67□□□□□ -1.66
VPS35Q96QK1 RNF19BPX-201ENST00000426224 625 ntBASIC4.67□□□□□ -1.66
VPS35Q96QK1 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS35Q96QK1 CACYBPP1-201ENST00000438592 684 ntBASIC4.67□□□□□ -1.66
VPS35Q96QK1 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC4.67□□□□□ -1.66
VPS35Q96QK1 AC104651.2-201ENST00000447549 528 ntBASIC4.67□□□□□ -1.66
VPS35Q96QK1 MORF4L1P4-201ENST00000450245 976 ntBASIC4.67□□□□□ -1.66
VPS35Q96QK1 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.67□□□□□ -1.66
VPS35Q96QK1 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC4.67□□□□□ -1.66
VPS35Q96QK1 RPL5P13-201ENST00000462840 709 ntBASIC4.67□□□□□ -1.66
VPS35Q96QK1 AC090142.1-201ENST00000465776 462 ntBASIC4.67□□□□□ -1.66
VPS35Q96QK1 HAUS1P1-201ENST00000505275 832 ntBASIC4.67□□□□□ -1.66
VPS35Q96QK1 MGST2-204ENST00000506797 634 ntTSL 2 BASIC4.67□□□□□ -1.66
VPS35Q96QK1 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC4.67□□□□□ -1.66
VPS35Q96QK1 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.67□□□□□ -1.66
VPS35Q96QK1 AC087477.6-201ENST00000559595 843 ntBASIC4.67□□□□□ -1.66
VPS35Q96QK1 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
VPS35Q96QK1 RN7SL652P-201ENST00000577769 300 ntBASIC4.67□□□□□ -1.66
VPS35Q96QK1 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.67□□□□□ -1.66
VPS35Q96QK1 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC4.67□□□□□ -1.66
VPS35Q96QK1 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC4.67□□□□□ -1.66
VPS35Q96QK1 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.67□□□□□ -1.66
VPS35Q96QK1 AC068790.7-201ENST00000602347 528 ntBASIC4.67□□□□□ -1.66
VPS35Q96QK1 OR7A19P-201ENST00000608051 733 ntBASIC4.67□□□□□ -1.66
VPS35Q96QK1 AC005021.1-201ENST00000608730 355 ntBASIC4.67□□□□□ -1.66
VPS35Q96QK1 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC4.67□□□□□ -1.66
VPS35Q96QK1 MIR6780A-201ENST00000615089 68 ntBASIC4.67□□□□□ -1.66
VPS35Q96QK1 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS35Q96QK1 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS35Q96QK1 DDX18P4-201ENST00000511690 1966 ntBASIC4.67□□□□□ -1.66
VPS35Q96QK1 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS35Q96QK1 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
VPS35Q96QK1 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
VPS35Q96QK1 AL031119.1-201ENST00000404707 1879 ntBASIC4.66□□□□□ -1.66
VPS35Q96QK1 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
VPS35Q96QK1 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC4.66□□□□□ -1.66
VPS35Q96QK1 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.66□□□□□ -1.66
VPS35Q96QK1 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.66□□□□□ -1.66
VPS35Q96QK1 AC073429.2-201ENST00000569694 1444 ntBASIC4.66□□□□□ -1.66
VPS35Q96QK1 SCN1A-220ENST00000641603 12506 ntBASIC4.66□□□□□ -1.66
VPS35Q96QK1 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC4.66□□□□□ -1.66
VPS35Q96QK1 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
VPS35Q96QK1 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
VPS35Q96QK1 AL121834.1-202ENST00000404494 277 ntBASIC4.66□□□□□ -1.66
VPS35Q96QK1 MAST4-207ENST00000407621 559 ntTSL 2 BASIC4.66□□□□□ -1.66
VPS35Q96QK1 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.66□□□□□ -1.66
VPS35Q96QK1 RPA2P2-201ENST00000419698 796 ntBASIC4.66□□□□□ -1.66
VPS35Q96QK1 RPS12P5-201ENST00000423449 371 ntBASIC4.66□□□□□ -1.66
VPS35Q96QK1 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.66□□□□□ -1.66
VPS35Q96QK1 Z99127.2-201ENST00000441426 334 ntBASIC4.66□□□□□ -1.66
VPS35Q96QK1 CASP3P1-201ENST00000446037 609 ntBASIC4.66□□□□□ -1.66
VPS35Q96QK1 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.66□□□□□ -1.66
VPS35Q96QK1 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.66□□□□□ -1.66
VPS35Q96QK1 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC4.66□□□□□ -1.66
VPS35Q96QK1 RNU6-491P-201ENST00000516099 110 ntBASIC4.66□□□□□ -1.66
VPS35Q96QK1 snoU109.6-201ENST00000516831 118 ntBASIC4.66□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms