Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 AP001542.2-201ENST00000593141 364 ntBASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 AL451064.1-201ENST00000607718 471 ntBASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 AL162574.1-201ENST00000615702 950 ntBASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 AC139769.3-201ENST00000618383 175 ntBASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 AL353796.1-201ENST00000561542 3241 ntBASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 AC097063.1-201ENST00000426714 1797 ntBASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 AC005261.4-201ENST00000600047 1385 ntBASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
PTCHD3Q3KNS1 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 AC138393.1-206ENST00000540997 1886 ntBASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 AL022311.1-201ENST00000623726 19416 ntBASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 RNU6-1339P-201ENST00000363574 91 ntBASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 RNU6-98P-201ENST00000384173 107 ntBASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 SNORA16A-201ENST00000384342 137 ntBASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 AL356131.1-201ENST00000405826 414 ntBASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 AL590084.1-201ENST00000407885 387 ntBASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 LSM5-205ENST00000409952 687 ntTSL 4 BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 RN7SKP222-201ENST00000410651 315 ntBASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 OR5AW1P-201ENST00000426334 1006 ntBASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 CNOT7P1-201ENST00000429006 852 ntBASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 FTLP19-201ENST00000433300 394 ntBASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 CYCSP6-201ENST00000434498 302 ntBASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 CYCSP12-201ENST00000437729 300 ntBASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 AC009263.1-201ENST00000441193 1239 ntBASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 AC092647.3-201ENST00000443044 633 ntBASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 AL929288.2-201ENST00000446368 407 ntBASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 RPL31P44-201ENST00000447680 377 ntBASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 AL935212.3-201ENST00000450729 284 ntBASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 AC234781.3-201ENST00000452540 973 ntBASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 ATG12P2-201ENST00000456830 416 ntBASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 COPS8P2-201ENST00000473228 627 ntBASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 RN7SL799P-201ENST00000475891 298 ntBASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 RPSAP51-201ENST00000497462 645 ntBASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 IGKV2D-10-201ENST00000520194 281 ntBASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 AC040904.1-201ENST00000590850 223 ntBASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 AC108738.1-201ENST00000603703 237 ntBASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 BNIP3P4-201ENST00000604946 565 ntBASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 AC099676.1-201ENST00000608886 657 ntBASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 ZNF663P-202ENST00000641770 1131 ntBASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 CASC19-264ENST00000641912 1184 ntBASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 AC000367.1-201ENST00000452711 1766 ntBASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 C4BPAP1-201ENST00000415474 1893 ntBASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC5.28□□□□□ -1.56
PTCHD3Q3KNS1 AC005005.4-201ENST00000623789 16698 ntBASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms