Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC4.16□□□□□ -1.74
FOXA1P55317 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC4.16□□□□□ -1.74
FOXA1P55317 LINC02374-201ENST00000503637 743 ntTSL 3 BASIC4.16□□□□□ -1.74
FOXA1P55317 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC4.16□□□□□ -1.74
FOXA1P55317 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
FOXA1P55317 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC4.16□□□□□ -1.74
FOXA1P55317 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
FOXA1P55317 RNA5SP154-201ENST00000516193 111 ntBASIC4.16□□□□□ -1.74
FOXA1P55317 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC4.16□□□□□ -1.74
FOXA1P55317 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC4.16□□□□□ -1.74
FOXA1P55317 AL109766.1-201ENST00000555080 552 ntBASIC4.16□□□□□ -1.74
FOXA1P55317 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.16□□□□□ -1.74
FOXA1P55317 RPL26P30-202ENST00000602923 645 ntBASIC4.16□□□□□ -1.74
FOXA1P55317 AL451049.1-201ENST00000608672 497 ntBASIC4.16□□□□□ -1.74
FOXA1P55317 AC012409.3-201ENST00000611343 981 ntBASIC4.16□□□□□ -1.74
FOXA1P55317 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC4.16□□□□□ -1.74
FOXA1P55317 AC008013.2-202ENST00000637965 364 ntBASIC4.16□□□□□ -1.74
FOXA1P55317 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.16□□□□□ -1.74
FOXA1P55317 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.16□□□□□ -1.74
FOXA1P55317 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC4.16□□□□□ -1.74
FOXA1P55317 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
FOXA1P55317 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.16□□□□□ -1.74
FOXA1P55317 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
FOXA1P55317 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
FOXA1P55317 AC005332.5-201ENST00000591222 2919 ntBASIC4.15□□□□□ -1.74
FOXA1P55317 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.15□□□□□ -1.74
FOXA1P55317 ALB-214ENST00000509063 1911 ntTSL 5 BASIC4.15□□□□□ -1.74
FOXA1P55317 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC4.15□□□□□ -1.74
FOXA1P55317 USP9YP9-201ENST00000429406 715 ntBASIC4.15□□□□□ -1.75
FOXA1P55317 NDUFA5P1-201ENST00000433858 341 ntBASIC4.15□□□□□ -1.75
FOXA1P55317 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC4.15□□□□□ -1.75
FOXA1P55317 AL162591.2-201ENST00000449634 317 ntBASIC4.15□□□□□ -1.75
FOXA1P55317 RPS6P2-201ENST00000454208 705 ntBASIC4.15□□□□□ -1.75
FOXA1P55317 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC4.15□□□□□ -1.75
FOXA1P55317 RPS27AP16-201ENST00000492222 470 ntBASIC4.15□□□□□ -1.75
FOXA1P55317 AC025554.1-201ENST00000505641 188 ntBASIC4.15□□□□□ -1.75
FOXA1P55317 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC4.15□□□□□ -1.75
FOXA1P55317 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC4.15□□□□□ -1.75
FOXA1P55317 OR8G5-201ENST00000524943 1041 ntBASIC4.15□□□□□ -1.75
FOXA1P55317 AC006064.5-201ENST00000541782 248 ntBASIC4.15□□□□□ -1.75
FOXA1P55317 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC4.15□□□□□ -1.75
FOXA1P55317 AC233280.2-201ENST00000603917 1070 ntBASIC4.15□□□□□ -1.75
FOXA1P55317 MIR6780A-201ENST00000615089 68 ntBASIC4.15□□□□□ -1.75
FOXA1P55317 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC4.15□□□□□ -1.75
FOXA1P55317 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.75
FOXA1P55317 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
FOXA1P55317 AL592182.3-201ENST00000642132 3304 ntBASIC4.15□□□□□ -1.75
FOXA1P55317 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.15□□□□□ -1.75
FOXA1P55317 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.15□□□□□ -1.75
FOXA1P55317 AL592148.3-201ENST00000608771 2646 ntBASIC4.15□□□□□ -1.75
FOXA1P55317 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
FOXA1P55317 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.15□□□□□ -1.75
FOXA1P55317 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.15□□□□□ -1.75
FOXA1P55317 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.75
FOXA1P55317 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC4.15□□□□□ -1.75
FOXA1P55317 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.15□□□□□ -1.75
FOXA1P55317 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
FOXA1P55317 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC4.14□□□□□ -1.75
FOXA1P55317 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.14□□□□□ -1.75
FOXA1P55317 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC4.14□□□□□ -1.75
FOXA1P55317 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
FOXA1P55317 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.14□□□□□ -1.75
FOXA1P55317 OR4K15-201ENST00000305051 1216 ntBASIC4.14□□□□□ -1.75
FOXA1P55317 RNA5SP388-201ENST00000362584 119 ntBASIC4.14□□□□□ -1.75
FOXA1P55317 RNA5SP175-201ENST00000364275 119 ntBASIC4.14□□□□□ -1.75
FOXA1P55317 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC4.14□□□□□ -1.75
FOXA1P55317 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC4.14□□□□□ -1.75
FOXA1P55317 AC004690.1-201ENST00000418216 328 ntBASIC4.14□□□□□ -1.75
FOXA1P55317 AC019050.1-201ENST00000418508 492 ntBASIC4.14□□□□□ -1.75
FOXA1P55317 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.14□□□□□ -1.75
FOXA1P55317 RBMY1KP-201ENST00000423480 476 ntBASIC4.14□□□□□ -1.75
FOXA1P55317 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC4.14□□□□□ -1.75
FOXA1P55317 NFYAP1-201ENST00000431953 972 ntBASIC4.14□□□□□ -1.75
FOXA1P55317 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC4.14□□□□□ -1.75
FOXA1P55317 RPL23AP52-201ENST00000439311 478 ntBASIC4.14□□□□□ -1.75
FOXA1P55317 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC4.14□□□□□ -1.75
FOXA1P55317 ARL2BPP10-201ENST00000446487 531 ntBASIC4.14□□□□□ -1.75
FOXA1P55317 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.14□□□□□ -1.75
FOXA1P55317 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC4.14□□□□□ -1.75
FOXA1P55317 AC073264.2-201ENST00000448886 166 ntBASIC4.14□□□□□ -1.75
FOXA1P55317 AC002553.2-201ENST00000453217 340 ntBASIC4.14□□□□□ -1.75
FOXA1P55317 AC010469.1-201ENST00000463864 576 ntBASIC4.14□□□□□ -1.75
FOXA1P55317 RPS23P1-201ENST00000491662 432 ntBASIC4.14□□□□□ -1.75
FOXA1P55317 KRTAP5-14P-201ENST00000502328 121 ntBASIC4.14□□□□□ -1.75
FOXA1P55317 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC4.14□□□□□ -1.75
FOXA1P55317 OR51K1P-201ENST00000510214 950 ntBASIC4.14□□□□□ -1.75
FOXA1P55317 PARP4P3-201ENST00000510265 317 ntBASIC4.14□□□□□ -1.75
FOXA1P55317 RNU6-964P-201ENST00000516524 69 ntBASIC4.14□□□□□ -1.75
FOXA1P55317 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC4.14□□□□□ -1.75
FOXA1P55317 OR5D15P-201ENST00000531671 942 ntBASIC4.14□□□□□ -1.75
FOXA1P55317 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC4.14□□□□□ -1.75
FOXA1P55317 AC084759.1-201ENST00000561168 290 ntBASIC4.14□□□□□ -1.75
FOXA1P55317 AC008638.3-201ENST00000603341 463 ntBASIC4.14□□□□□ -1.75
FOXA1P55317 AC012603.1-201ENST00000606424 528 ntBASIC4.14□□□□□ -1.75
FOXA1P55317 AP005019.3-201ENST00000620418 560 ntBASIC4.14□□□□□ -1.75
FOXA1P55317 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC4.14□□□□□ -1.75
FOXA1P55317 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
FOXA1P55317 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.14□□□□□ -1.75
FOXA1P55317 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
FOXA1P55317 MTCO1P15-201ENST00000529569 1526 ntBASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 132.3 ms