Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 ASNSD1-208ENST00000607690 535 ntTSL 2 BASIC4.38□□□□□ -1.71
HOXA1P49639 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC4.38□□□□□ -1.71
HOXA1P49639 AC021106.3-201ENST00000623925 531 ntBASIC4.38□□□□□ -1.71
HOXA1P49639 AC136428.4-201ENST00000634254 1155 ntBASIC4.38□□□□□ -1.71
HOXA1P49639 AC073869.8-201ENST00000641806 335 ntBASIC4.38□□□□□ -1.71
HOXA1P49639 AC068254.2-201ENST00000623938 3577 ntBASIC4.38□□□□□ -1.71
HOXA1P49639 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HOXA1P49639 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
HOXA1P49639 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HOXA1P49639 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC4.38□□□□□ -1.71
HOXA1P49639 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.38□□□□□ -1.71
HOXA1P49639 CCT8P1-201ENST00000413611 1657 ntBASIC4.38□□□□□ -1.71
HOXA1P49639 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC4.38□□□□□ -1.71
HOXA1P49639 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
HOXA1P49639 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.38□□□□□ -1.71
HOXA1P49639 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.38□□□□□ -1.71
HOXA1P49639 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
HOXA1P49639 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
HOXA1P49639 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
HOXA1P49639 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
HOXA1P49639 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
HOXA1P49639 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HOXA1P49639 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HOXA1P49639 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
HOXA1P49639 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HOXA1P49639 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HOXA1P49639 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
HOXA1P49639 RNA5SP477-201ENST00000362639 119 ntBASIC4.37□□□□□ -1.71
HOXA1P49639 RNU1-19P-201ENST00000363306 165 ntBASIC4.37□□□□□ -1.71
HOXA1P49639 RNU1-65P-201ENST00000363919 148 ntBASIC4.37□□□□□ -1.71
HOXA1P49639 Y_RNA.578-201ENST00000390903 88 ntBASIC4.37□□□□□ -1.71
HOXA1P49639 AC013404.1-201ENST00000413068 249 ntBASIC4.37□□□□□ -1.71
HOXA1P49639 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC4.37□□□□□ -1.71
HOXA1P49639 LINC00701-201ENST00000418295 742 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
HOXA1P49639 KRR1P1-201ENST00000419430 803 ntBASIC4.37□□□□□ -1.71
HOXA1P49639 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.37□□□□□ -1.71
HOXA1P49639 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC4.37□□□□□ -1.71
HOXA1P49639 AL035660.1-201ENST00000422041 222 ntBASIC4.37□□□□□ -1.71
HOXA1P49639 AC007161.1-204ENST00000423039 460 ntBASIC4.37□□□□□ -1.71
HOXA1P49639 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC4.37□□□□□ -1.71
HOXA1P49639 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC4.37□□□□□ -1.71
HOXA1P49639 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC4.37□□□□□ -1.71
HOXA1P49639 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
HOXA1P49639 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC4.37□□□□□ -1.71
HOXA1P49639 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.37□□□□□ -1.71
HOXA1P49639 AL583854.1-201ENST00000438818 613 ntTSL 5 BASIC4.37□□□□□ -1.71
HOXA1P49639 AC069285.2-201ENST00000440210 275 ntBASIC4.37□□□□□ -1.71
HOXA1P49639 VN1R25P-201ENST00000443385 738 ntBASIC4.37□□□□□ -1.71
HOXA1P49639 Z77249.1-201ENST00000444622 1175 ntBASIC4.37□□□□□ -1.71
HOXA1P49639 SEPT14P24-201ENST00000447236 180 ntBASIC4.37□□□□□ -1.71
HOXA1P49639 MTCYBP11-201ENST00000447254 1109 ntBASIC4.37□□□□□ -1.71
HOXA1P49639 ZNF886P-201ENST00000450781 723 ntBASIC4.37□□□□□ -1.71
HOXA1P49639 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC4.37□□□□□ -1.71
HOXA1P49639 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.37□□□□□ -1.71
HOXA1P49639 MTCO2P6-201ENST00000463134 685 ntBASIC4.37□□□□□ -1.71
HOXA1P49639 AC021205.1-201ENST00000468797 348 ntBASIC4.37□□□□□ -1.71
HOXA1P49639 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC4.37□□□□□ -1.71
HOXA1P49639 AP002884.1-201ENST00000479691 655 ntBASIC4.37□□□□□ -1.71
HOXA1P49639 AC022133.1-201ENST00000490961 571 ntBASIC4.37□□□□□ -1.71
HOXA1P49639 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
HOXA1P49639 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC4.37□□□□□ -1.71
HOXA1P49639 AC025458.1-201ENST00000506046 166 ntBASIC4.37□□□□□ -1.71
HOXA1P49639 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC4.37□□□□□ -1.71
HOXA1P49639 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC4.37□□□□□ -1.71
HOXA1P49639 NDUFB4P12-201ENST00000513465 390 ntBASIC4.37□□□□□ -1.71
HOXA1P49639 RNU6-1004P-201ENST00000516584 111 ntBASIC4.37□□□□□ -1.71
HOXA1P49639 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC4.37□□□□□ -1.71
HOXA1P49639 AC011853.1-201ENST00000518911 454 ntBASIC4.37□□□□□ -1.71
HOXA1P49639 AC090281.1-201ENST00000523019 276 ntBASIC4.37□□□□□ -1.71
HOXA1P49639 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC4.37□□□□□ -1.71
HOXA1P49639 AC024405.1-201ENST00000532521 1042 ntBASIC4.37□□□□□ -1.71
HOXA1P49639 DCN-210ENST00000547568 823 ntTSL 3 BASIC4.37□□□□□ -1.71
HOXA1P49639 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC4.37□□□□□ -1.71
HOXA1P49639 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
HOXA1P49639 AC107958.1-201ENST00000556576 290 ntBASIC4.37□□□□□ -1.71
HOXA1P49639 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
HOXA1P49639 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC4.37□□□□□ -1.71
HOXA1P49639 HMGB3P26-201ENST00000560051 582 ntBASIC4.37□□□□□ -1.71
HOXA1P49639 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC4.37□□□□□ -1.71
HOXA1P49639 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC4.37□□□□□ -1.71
HOXA1P49639 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC4.37□□□□□ -1.71
HOXA1P49639 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC4.37□□□□□ -1.71
HOXA1P49639 AC008751.2-201ENST00000597885 980 ntBASIC4.37□□□□□ -1.71
HOXA1P49639 GMFG-212ENST00000602185 423 ntTSL 3 BASIC4.37□□□□□ -1.71
HOXA1P49639 MTND3P19-201ENST00000603825 345 ntBASIC4.37□□□□□ -1.71
HOXA1P49639 AC013468.1-201ENST00000608680 598 ntBASIC4.37□□□□□ -1.71
HOXA1P49639 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.37□□□□□ -1.71
HOXA1P49639 AL121890.3-201ENST00000618494 516 ntBASIC4.37□□□□□ -1.71
HOXA1P49639 BX005214.3-202ENST00000619809 325 ntBASIC4.37□□□□□ -1.71
HOXA1P49639 AL356121.2-201ENST00000624715 780 ntBASIC4.37□□□□□ -1.71
HOXA1P49639 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC4.37□□□□□ -1.71
HOXA1P49639 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
HOXA1P49639 AC107027.3-201ENST00000565095 3473 ntBASIC4.37□□□□□ -1.71
HOXA1P49639 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HOXA1P49639 MAPK10-303ENST00000641324 3959 ntBASIC4.37□□□□□ -1.71
HOXA1P49639 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.37□□□□□ -1.71
HOXA1P49639 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
HOXA1P49639 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
HOXA1P49639 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
HOXA1P49639 AC099786.3-201ENST00000565735 1410 ntBASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 90.9 ms