Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC7.16□□□□□ -1.26
CUX1P39880 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC7.16□□□□□ -1.26
CUX1P39880 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
CUX1P39880 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC7.16□□□□□ -1.26
CUX1P39880 RNU6-352P-201ENST00000516908 107 ntBASIC7.16□□□□□ -1.26
CUX1P39880 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC7.16□□□□□ -1.26
CUX1P39880 AC087499.8-201ENST00000578406 226 ntBASIC7.16□□□□□ -1.26
CUX1P39880 AC008739.3-201ENST00000603262 127 ntBASIC7.16□□□□□ -1.26
CUX1P39880 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC7.16□□□□□ -1.26
CUX1P39880 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
CUX1P39880 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
CUX1P39880 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
CUX1P39880 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC7.15□□□□□ -1.26
CUX1P39880 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC7.15□□□□□ -1.26
CUX1P39880 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
CUX1P39880 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC7.15□□□□□ -1.26
CUX1P39880 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
CUX1P39880 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC7.15□□□□□ -1.26
CUX1P39880 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
CUX1P39880 CASC19-261ENST00000641853 1638 ntBASIC7.15□□□□□ -1.26
CUX1P39880 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC7.15□□□□□ -1.27
CUX1P39880 AL592291.1-201ENST00000403830 352 ntBASIC7.15□□□□□ -1.27
CUX1P39880 SNORA11.1-201ENST00000408133 129 ntBASIC7.15□□□□□ -1.27
CUX1P39880 TCEA1P4-201ENST00000415066 844 ntBASIC7.15□□□□□ -1.27
CUX1P39880 VTI1BP4-201ENST00000427516 527 ntBASIC7.15□□□□□ -1.27
CUX1P39880 CYCSP43-201ENST00000438233 310 ntBASIC7.15□□□□□ -1.27
CUX1P39880 RPL23AP81-201ENST00000455252 467 ntBASIC7.15□□□□□ -1.27
CUX1P39880 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
CUX1P39880 AC091564.1-201ENST00000464563 479 ntBASIC7.15□□□□□ -1.27
CUX1P39880 AC022655.2-201ENST00000577280 318 ntBASIC7.15□□□□□ -1.27
CUX1P39880 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
CUX1P39880 IMMP1LP1-201ENST00000605170 488 ntBASIC7.15□□□□□ -1.27
CUX1P39880 CR392039.5-201ENST00000623201 510 ntBASIC7.15□□□□□ -1.27
CUX1P39880 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC7.15□□□□□ -1.27
CUX1P39880 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
CUX1P39880 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
CUX1P39880 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
CUX1P39880 AC108032.1-201ENST00000416706 207 ntBASIC7.14□□□□□ -1.27
CUX1P39880 RPL23AP83-201ENST00000434984 473 ntBASIC7.14□□□□□ -1.27
CUX1P39880 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC7.14□□□□□ -1.27
CUX1P39880 NOTCH2P1-201ENST00000443481 624 ntBASIC7.14□□□□□ -1.27
CUX1P39880 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC7.14□□□□□ -1.27
CUX1P39880 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC7.14□□□□□ -1.27
CUX1P39880 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC7.14□□□□□ -1.27
CUX1P39880 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC7.14□□□□□ -1.27
CUX1P39880 RN7SL339P-201ENST00000580597 296 ntBASIC7.14□□□□□ -1.27
CUX1P39880 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC7.14□□□□□ -1.27
CUX1P39880 AC099669.2-201ENST00000616549 437 ntBASIC7.14□□□□□ -1.27
CUX1P39880 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC7.14□□□□□ -1.27
CUX1P39880 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC7.14□□□□□ -1.27
CUX1P39880 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC7.14□□□□□ -1.27
CUX1P39880 AC068870.3-201ENST00000625077 2536 ntBASIC7.14□□□□□ -1.27
CUX1P39880 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC7.14□□□□□ -1.27
CUX1P39880 AC104623.2-202ENST00000623477 4002 ntBASIC7.14□□□□□ -1.27
CUX1P39880 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
CUX1P39880 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
CUX1P39880 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC7.13□□□□□ -1.27
CUX1P39880 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC7.13□□□□□ -1.27
CUX1P39880 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC7.13□□□□□ -1.27
CUX1P39880 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC7.13□□□□□ -1.27
CUX1P39880 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC7.13□□□□□ -1.27
CUX1P39880 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC7.13□□□□□ -1.27
CUX1P39880 U8.11-201ENST00000384699 133 ntBASIC7.13□□□□□ -1.27
CUX1P39880 U8.12-201ENST00000384701 133 ntBASIC7.13□□□□□ -1.27
CUX1P39880 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC7.13□□□□□ -1.27
CUX1P39880 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC7.13□□□□□ -1.27
CUX1P39880 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC7.13□□□□□ -1.27
CUX1P39880 U8.18-201ENST00000459285 133 ntBASIC7.13□□□□□ -1.27
CUX1P39880 HSPE1P5-201ENST00000561489 272 ntBASIC7.13□□□□□ -1.27
CUX1P39880 MIR5685-201ENST00000579080 79 ntBASIC7.13□□□□□ -1.27
CUX1P39880 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC7.13□□□□□ -1.27
CUX1P39880 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
CUX1P39880 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
CUX1P39880 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
CUX1P39880 EED-206ENST00000527888 1422 ntTSL 2 BASIC7.13□□□□□ -1.27
CUX1P39880 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
CUX1P39880 AP002512.4-202ENST00000641599 4530 ntBASIC7.13□□□□□ -1.27
CUX1P39880 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC7.13□□□□□ -1.27
CUX1P39880 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
CUX1P39880 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
CUX1P39880 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC7.12□□□□□ -1.27
CUX1P39880 RNU4-6P-201ENST00000410804 122 ntBASIC7.12□□□□□ -1.27
CUX1P39880 AC069304.1-201ENST00000491593 704 ntBASIC7.12□□□□□ -1.27
CUX1P39880 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC7.12□□□□□ -1.27
CUX1P39880 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC7.12□□□□□ -1.27
CUX1P39880 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC7.12□□□□□ -1.27
CUX1P39880 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC7.12□□□□□ -1.27
CUX1P39880 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC7.12□□□□□ -1.27
CUX1P39880 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC7.12□□□□□ -1.27
CUX1P39880 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC7.12□□□□□ -1.27
CUX1P39880 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC7.12□□□□□ -1.27
CUX1P39880 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC7.12□□□□□ -1.27
CUX1P39880 AL079305.1-201ENST00000623159 3008 ntBASIC7.12□□□□□ -1.27
CUX1P39880 AC004690.2-201ENST00000472838 1754 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
CUX1P39880 AC116667.1-201ENST00000604855 2072 ntBASIC7.12□□□□□ -1.27
CUX1P39880 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC7.11□□□□□ -1.27
CUX1P39880 AC007991.1-201ENST00000522680 631 ntBASIC7.11□□□□□ -1.27
CUX1P39880 AC090286.3-201ENST00000573133 187 ntBASIC7.11□□□□□ -1.27
CUX1P39880 AC090912.3-201ENST00000609775 533 ntBASIC7.11□□□□□ -1.27
CUX1P39880 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC7.11□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms