Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 MIR372-201ENST00000362225 67 ntBASIC5.88□□□□□ -1.47
HOXC9P31274 RNU1-83P-201ENST00000363426 164 ntBASIC5.88□□□□□ -1.47
HOXC9P31274 RNA5SP187-201ENST00000384400 119 ntBASIC5.88□□□□□ -1.47
HOXC9P31274 USP9YP19-201ENST00000412165 485 ntBASIC5.88□□□□□ -1.47
HOXC9P31274 MTND4LP21-201ENST00000415303 295 ntBASIC5.88□□□□□ -1.47
HOXC9P31274 Z74021.1-201ENST00000423610 407 ntBASIC5.88□□□□□ -1.47
HOXC9P31274 AL158073.1-201ENST00000426848 1104 ntBASIC5.88□□□□□ -1.47
HOXC9P31274 HSFY6P-201ENST00000445573 403 ntBASIC5.88□□□□□ -1.47
HOXC9P31274 AL500527.1-201ENST00000448532 255 ntBASIC5.88□□□□□ -1.47
HOXC9P31274 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC5.88□□□□□ -1.47
HOXC9P31274 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC5.88□□□□□ -1.47
HOXC9P31274 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC5.88□□□□□ -1.47
HOXC9P31274 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC5.88□□□□□ -1.47
HOXC9P31274 RNA5SP49-201ENST00000516450 115 ntBASIC5.88□□□□□ -1.47
HOXC9P31274 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HOXC9P31274 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC5.88□□□□□ -1.47
HOXC9P31274 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC5.88□□□□□ -1.47
HOXC9P31274 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC5.88□□□□□ -1.47
HOXC9P31274 AL354984.3-201ENST00000604803 325 ntBASIC5.88□□□□□ -1.47
HOXC9P31274 AC245389.2-201ENST00000616023 576 ntBASIC5.88□□□□□ -1.47
HOXC9P31274 AC242843.1-201ENST00000618702 573 ntBASIC5.88□□□□□ -1.47
HOXC9P31274 AC020923.1-201ENST00000624021 917 ntBASIC5.88□□□□□ -1.47
HOXC9P31274 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HOXC9P31274 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HOXC9P31274 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HOXC9P31274 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
HOXC9P31274 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
HOXC9P31274 OR51C1P-202ENST00000641159 1444 ntBASIC5.88□□□□□ -1.47
HOXC9P31274 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC5.88□□□□□ -1.47
HOXC9P31274 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC5.88□□□□□ -1.47
HOXC9P31274 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HOXC9P31274 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC5.88□□□□□ -1.47
HOXC9P31274 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.88□□□□□ -1.47
HOXC9P31274 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
HOXC9P31274 MFSD8-242ENST00000641690 4199 ntBASIC5.87□□□□□ -1.47
HOXC9P31274 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC5.87□□□□□ -1.47
HOXC9P31274 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
HOXC9P31274 SPRR2C-201ENST00000290702 219 ntBASIC5.87□□□□□ -1.47
HOXC9P31274 RNU1-94P-201ENST00000362627 173 ntBASIC5.87□□□□□ -1.47
HOXC9P31274 RNA5SP151-201ENST00000365632 117 ntBASIC5.87□□□□□ -1.47
HOXC9P31274 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
HOXC9P31274 AL592291.1-201ENST00000403830 352 ntBASIC5.87□□□□□ -1.47
HOXC9P31274 FCF1P5-201ENST00000406490 482 ntBASIC5.87□□□□□ -1.47
HOXC9P31274 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC5.87□□□□□ -1.47
HOXC9P31274 MFSD13B-201ENST00000420133 1290 ntBASIC5.87□□□□□ -1.47
HOXC9P31274 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC5.87□□□□□ -1.47
HOXC9P31274 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC5.87□□□□□ -1.47
HOXC9P31274 BTF3P10-201ENST00000433415 495 ntBASIC5.87□□□□□ -1.47
HOXC9P31274 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
HOXC9P31274 AL359073.1-201ENST00000448036 403 ntBASIC5.87□□□□□ -1.47
HOXC9P31274 CREM-238ENST00000488741 651 ntTSL 2 BASIC5.87□□□□□ -1.47
HOXC9P31274 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC5.87□□□□□ -1.47
HOXC9P31274 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC5.87□□□□□ -1.47
HOXC9P31274 RNA5SP497-201ENST00000516081 97 ntBASIC5.87□□□□□ -1.47
HOXC9P31274 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
HOXC9P31274 OR8R1P-201ENST00000543943 764 ntBASIC5.87□□□□□ -1.47
HOXC9P31274 AC010547.7-201ENST00000570323 333 ntBASIC5.87□□□□□ -1.47
HOXC9P31274 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC5.87□□□□□ -1.47
HOXC9P31274 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC5.87□□□□□ -1.47
HOXC9P31274 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC5.87□□□□□ -1.47
HOXC9P31274 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC5.87□□□□□ -1.47
HOXC9P31274 AC008833.1-201ENST00000611633 691 ntBASIC5.87□□□□□ -1.47
HOXC9P31274 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC5.87□□□□□ -1.47
HOXC9P31274 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
HOXC9P31274 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.87□□□□□ -1.47
HOXC9P31274 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
HOXC9P31274 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC5.87□□□□□ -1.47
HOXC9P31274 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC5.87□□□□□ -1.47
HOXC9P31274 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC5.87□□□□□ -1.47
HOXC9P31274 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC5.87□□□□□ -1.47
HOXC9P31274 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
HOXC9P31274 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
HOXC9P31274 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
HOXC9P31274 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC5.86□□□□□ -1.47
HOXC9P31274 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC5.86□□□□□ -1.47
HOXC9P31274 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
HOXC9P31274 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC5.86□□□□□ -1.47
HOXC9P31274 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
HOXC9P31274 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
HOXC9P31274 CDY11P-201ENST00000447168 1651 ntBASIC5.86□□□□□ -1.47
HOXC9P31274 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
HOXC9P31274 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
HOXC9P31274 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
HOXC9P31274 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
HOXC9P31274 RNU1-64P-201ENST00000365443 163 ntBASIC5.86□□□□□ -1.47
HOXC9P31274 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
HOXC9P31274 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC5.86□□□□□ -1.47
HOXC9P31274 AC097374.1-203ENST00000400783 485 ntBASIC5.86□□□□□ -1.47
HOXC9P31274 PPIAP31-201ENST00000405422 495 ntBASIC5.86□□□□□ -1.47
HOXC9P31274 OR8G2P-201ENST00000412796 908 ntBASIC5.86□□□□□ -1.47
HOXC9P31274 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC5.86□□□□□ -1.47
HOXC9P31274 AL132765.1-201ENST00000434165 553 ntBASIC5.86□□□□□ -1.47
HOXC9P31274 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC5.86□□□□□ -1.47
HOXC9P31274 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC5.86□□□□□ -1.47
HOXC9P31274 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC5.86□□□□□ -1.47
HOXC9P31274 RPS27AP13-201ENST00000498403 237 ntBASIC5.86□□□□□ -1.47
HOXC9P31274 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC5.86□□□□□ -1.47
HOXC9P31274 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC5.86□□□□□ -1.47
HOXC9P31274 OR5BC1P-201ENST00000529327 739 ntBASIC5.86□□□□□ -1.47
HOXC9P31274 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC5.86□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 88.6 ms