Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC245028.1-201ENST00000423259 256 ntBASIC6.21□□□□□ -1.42
COL6A1P12109 GTF2IP2-201ENST00000424290 697 ntBASIC6.21□□□□□ -1.42
COL6A1P12109 AL360081.1-201ENST00000428299 555 ntBASIC6.21□□□□□ -1.42
COL6A1P12109 IFNNP1-201ENST00000429219 553 ntBASIC6.21□□□□□ -1.42
COL6A1P12109 RBMY2QP-201ENST00000429799 1147 ntBASIC6.21□□□□□ -1.42
COL6A1P12109 AC091390.1-201ENST00000433904 331 ntBASIC6.21□□□□□ -1.42
COL6A1P12109 NANOGP2-201ENST00000435391 727 ntBASIC6.21□□□□□ -1.42
COL6A1P12109 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
COL6A1P12109 MTND5P2-201ENST00000442927 1142 ntBASIC6.21□□□□□ -1.42
COL6A1P12109 AC023512.1-201ENST00000444513 499 ntBASIC6.21□□□□□ -1.42
COL6A1P12109 SEPT14P24-201ENST00000447236 180 ntBASIC6.21□□□□□ -1.42
COL6A1P12109 AC105399.1-202ENST00000447303 205 ntBASIC6.21□□□□□ -1.42
COL6A1P12109 TPT1P13-201ENST00000449760 499 ntBASIC6.21□□□□□ -1.42
COL6A1P12109 AC234781.3-201ENST00000452540 973 ntBASIC6.21□□□□□ -1.42
COL6A1P12109 OSTCP1-201ENST00000455507 450 ntBASIC6.21□□□□□ -1.42
COL6A1P12109 NDUFA12P1-201ENST00000455914 406 ntBASIC6.21□□□□□ -1.42
COL6A1P12109 RPL7P32-201ENST00000457119 744 ntBASIC6.21□□□□□ -1.42
COL6A1P12109 RNU7-125P-201ENST00000458760 62 ntBASIC6.21□□□□□ -1.42
COL6A1P12109 AC090114.3-201ENST00000479267 829 ntBASIC6.21□□□□□ -1.42
COL6A1P12109 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC6.21□□□□□ -1.42
COL6A1P12109 MTCO2P32-201ENST00000514865 403 ntBASIC6.21□□□□□ -1.42
COL6A1P12109 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC6.21□□□□□ -1.42
COL6A1P12109 AC105185.1-201ENST00000518705 535 ntBASIC6.21□□□□□ -1.42
COL6A1P12109 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC6.21□□□□□ -1.42
COL6A1P12109 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC6.21□□□□□ -1.42
COL6A1P12109 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC6.21□□□□□ -1.42
COL6A1P12109 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC6.21□□□□□ -1.42
COL6A1P12109 AC011611.5-201ENST00000552477 578 ntBASIC6.21□□□□□ -1.42
COL6A1P12109 PCNPP1-201ENST00000552501 511 ntBASIC6.21□□□□□ -1.42
COL6A1P12109 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC6.21□□□□□ -1.42
COL6A1P12109 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC6.21□□□□□ -1.42
COL6A1P12109 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC6.21□□□□□ -1.42
COL6A1P12109 AC135628.1-201ENST00000568867 534 ntBASIC6.21□□□□□ -1.42
COL6A1P12109 AL163952.1-202ENST00000569625 600 ntBASIC6.21□□□□□ -1.42
COL6A1P12109 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC6.21□□□□□ -1.42
COL6A1P12109 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC6.21□□□□□ -1.42
COL6A1P12109 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC6.21□□□□□ -1.42
COL6A1P12109 AL450489.1-201ENST00000612071 468 ntBASIC6.21□□□□□ -1.42
COL6A1P12109 AC090527.3-201ENST00000619041 548 ntBASIC6.21□□□□□ -1.42
COL6A1P12109 OR1S1-201ENST00000624470 978 ntBASIC6.21□□□□□ -1.42
COL6A1P12109 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.42
COL6A1P12109 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL6A1P12109 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC6.21□□□□□ -1.42
COL6A1P12109 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC6.21□□□□□ -1.42
COL6A1P12109 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL6A1P12109 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL6A1P12109 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC6.21□□□□□ -1.42
COL6A1P12109 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC6.21□□□□□ -1.42
COL6A1P12109 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
COL6A1P12109 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL6A1P12109 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL6A1P12109 RMST-202ENST00000541282 2099 ntTSL 2 BASIC6.21□□□□□ -1.42
COL6A1P12109 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC6.21□□□□□ -1.42
COL6A1P12109 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC6.21□□□□□ -1.42
COL6A1P12109 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
COL6A1P12109 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL6A1P12109 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
COL6A1P12109 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC6.2□□□□□ -1.42
COL6A1P12109 AP000526.1-201ENST00000603308 1388 ntBASIC6.2□□□□□ -1.42
COL6A1P12109 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC6.2□□□□□ -1.42
COL6A1P12109 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL6A1P12109 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL6A1P12109 AC006484.1-201ENST00000435086 1884 ntBASIC6.2□□□□□ -1.42
COL6A1P12109 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL6A1P12109 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL6A1P12109 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC6.2□□□□□ -1.42
COL6A1P12109 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL6A1P12109 RN7SKP104-201ENST00000362605 328 ntBASIC6.2□□□□□ -1.42
COL6A1P12109 RN7SKP6-201ENST00000364795 319 ntBASIC6.2□□□□□ -1.42
COL6A1P12109 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
COL6A1P12109 MIR130A-201ENST00000385274 89 ntBASIC6.2□□□□□ -1.42
COL6A1P12109 AC013442.1-201ENST00000397347 228 ntBASIC6.2□□□□□ -1.42
COL6A1P12109 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL6A1P12109 AL021407.1-201ENST00000404531 386 ntBASIC6.2□□□□□ -1.42
COL6A1P12109 AL590084.1-201ENST00000407885 387 ntBASIC6.2□□□□□ -1.42
COL6A1P12109 Y_RNA.604-201ENST00000410574 102 ntBASIC6.2□□□□□ -1.42
COL6A1P12109 RPS6P23-201ENST00000413224 722 ntBASIC6.2□□□□□ -1.42
COL6A1P12109 MTCO3P41-201ENST00000414801 328 ntBASIC6.2□□□□□ -1.42
COL6A1P12109 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC6.2□□□□□ -1.42
COL6A1P12109 AC104837.2-201ENST00000427236 424 ntBASIC6.2□□□□□ -1.42
COL6A1P12109 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC6.2□□□□□ -1.42
COL6A1P12109 NPM1P49-201ENST00000448027 714 ntBASIC6.2□□□□□ -1.42
COL6A1P12109 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC6.2□□□□□ -1.42
COL6A1P12109 RPL10P17-201ENST00000453852 316 ntBASIC6.2□□□□□ -1.42
COL6A1P12109 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC6.2□□□□□ -1.42
COL6A1P12109 RPL23AP44-201ENST00000482216 473 ntBASIC6.2□□□□□ -1.42
COL6A1P12109 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL6A1P12109 AC023050.1-201ENST00000498198 304 ntBASIC6.2□□□□□ -1.42
COL6A1P12109 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC6.2□□□□□ -1.42
COL6A1P12109 AC109927.2-201ENST00000506416 303 ntBASIC6.2□□□□□ -1.42
COL6A1P12109 RNU6-941P-201ENST00000516346 108 ntBASIC6.2□□□□□ -1.42
COL6A1P12109 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC6.2□□□□□ -1.42
COL6A1P12109 ZDHHC20P3-201ENST00000531576 336 ntBASIC6.2□□□□□ -1.42
COL6A1P12109 ERP27-202ENST00000540097 993 ntTSL 2 BASIC6.2□□□□□ -1.42
COL6A1P12109 AC244502.2-201ENST00000543361 851 ntBASIC6.2□□□□□ -1.42
COL6A1P12109 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL6A1P12109 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC6.2□□□□□ -1.42
COL6A1P12109 AC010546.1-201ENST00000569391 485 ntBASIC6.2□□□□□ -1.42
COL6A1P12109 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC6.2□□□□□ -1.42
COL6A1P12109 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC6.2□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms