Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC073648.3-201ENST00000504939 925 ntBASIC5.31□□□□□ -1.56
CCDC140Q96MF4 RNA5SP278-201ENST00000517055 102 ntBASIC5.31□□□□□ -1.56
CCDC140Q96MF4 WBP1LP3-201ENST00000523033 208 ntBASIC5.31□□□□□ -1.56
CCDC140Q96MF4 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 LINC02308-201ENST00000555001 637 ntTSL 2 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 AC008551.1-201ENST00000575612 405 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 RN7SL131P-201ENST00000579043 256 ntBASIC5.31□□□□□ -1.56
CCDC140Q96MF4 RN7SL426P-201ENST00000579106 295 ntBASIC5.31□□□□□ -1.56
CCDC140Q96MF4 AP005119.2-201ENST00000579735 1105 ntBASIC5.31□□□□□ -1.56
CCDC140Q96MF4 CTSLP2-201ENST00000580501 394 ntBASIC5.31□□□□□ -1.56
CCDC140Q96MF4 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 PPIAL4C-201ENST00000585245 600 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 AC007786.1-202ENST00000590607 443 ntTSL 3 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 RPL27-207ENST00000590864 569 ntTSL 2 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 RPL12P25-202ENST00000598100 674 ntBASIC5.31□□□□□ -1.56
CCDC140Q96MF4 AC121334.2-201ENST00000605387 271 ntBASIC5.31□□□□□ -1.56
CCDC140Q96MF4 Z98949.1-217ENST00000609275 994 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 U1.25-201ENST00000614085 162 ntBASIC5.31□□□□□ -1.56
CCDC140Q96MF4 AC120057.5-201ENST00000623840 154 ntBASIC5.31□□□□□ -1.56
CCDC140Q96MF4 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 ASB8-218ENST00000629941 278 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 SRP54-214ENST00000630962 162 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 AC140479.4-205ENST00000636339 820 ntBASIC5.31□□□□□ -1.56
CCDC140Q96MF4 UNC13B-210ENST00000636694 8012 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 PTPRG-AS1-204ENST00000474795 2661 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 MAPK10-323ENST00000641493 3207 ntBASIC5.31□□□□□ -1.56
CCDC140Q96MF4 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 NEK5-201ENST00000355568 2918 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 GPR89A-203ENST00000462900 1527 ntTSL 2 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 CEP97-206ENST00000494050 2870 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 GAGE1-204ENST00000619375 2873 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 ECHDC1-210ENST00000454859 2341 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 BCL2L14-201ENST00000266434 2039 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 CYP2G2P-201ENST00000594920 1485 ntBASIC5.31□□□□□ -1.56
CCDC140Q96MF4 RASSF9-201ENST00000361228 5682 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 ZNF484-204ENST00000395506 4031 ntTSL 3 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 USP16-203ENST00000399975 2960 ntAPPRIS ALT1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 GCNA-201ENST00000373695 3213 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 AC019270.1-201ENST00000523495 3488 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC140Q96MF4 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 SPATA31B1P-201ENST00000434692 4016 ntBASIC5.3□□□□□ -1.56
CCDC140Q96MF4 CLCA3P-203ENST00000490028 2781 ntBASIC5.3□□□□□ -1.56
CCDC140Q96MF4 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 PDE4B-207ENST00000480109 2037 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 LRMDA-208ENST00000496424 3923 ntTSL 2 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 SLC39A12-202ENST00000377371 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 CACNB2-207ENST00000377329 3396 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 RAET1L-201ENST00000286380 802 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 MIR431-201ENST00000385266 114 ntBASIC5.3□□□□□ -1.56
CCDC140Q96MF4 RNA5SP176-201ENST00000390956 110 ntBASIC5.3□□□□□ -1.56
CCDC140Q96MF4 RPL23AP32-201ENST00000395315 459 ntBASIC5.3□□□□□ -1.56
CCDC140Q96MF4 ATP5E-203ENST00000395663 697 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 HMGB3P20-201ENST00000417997 600 ntBASIC5.3□□□□□ -1.56
CCDC140Q96MF4 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 PUDPP2-201ENST00000431423 643 ntBASIC5.3□□□□□ -1.56
CCDC140Q96MF4 AC245140.1-201ENST00000433825 341 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 HMGB3P12-201ENST00000438745 556 ntBASIC5.3□□□□□ -1.56
CCDC140Q96MF4 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 CRYGGP-201ENST00000443337 145 ntBASIC5.3□□□□□ -1.56
CCDC140Q96MF4 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 RPS26P11-201ENST00000463445 348 ntBASIC5.3□□□□□ -1.56
CCDC140Q96MF4 RPS26P6-201ENST00000475156 348 ntBASIC5.3□□□□□ -1.56
CCDC140Q96MF4 RN7SL705P-201ENST00000481678 294 ntBASIC5.3□□□□□ -1.56
CCDC140Q96MF4 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 AC008770.1-202ENST00000495324 516 ntTSL 2 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 AC091951.2-201ENST00000500762 203 ntBASIC5.3□□□□□ -1.56
CCDC140Q96MF4 AC091868.2-201ENST00000506717 556 ntTSL 3 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 NACAP5-201ENST00000509863 636 ntBASIC5.3□□□□□ -1.56
CCDC140Q96MF4 SUMO2P7-201ENST00000511179 285 ntBASIC5.3□□□□□ -1.56
CCDC140Q96MF4 RNU6-1281P-201ENST00000516223 105 ntBASIC5.3□□□□□ -1.56
CCDC140Q96MF4 snoU109.5-201ENST00000516231 132 ntBASIC5.3□□□□□ -1.56
CCDC140Q96MF4 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 AC090458.1-203ENST00000527757 546 ntTSL 3 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 LRTOMT-217ENST00000539587 428 ntTSL 2 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 SUB1P2-201ENST00000556401 297 ntBASIC5.3□□□□□ -1.56
CCDC140Q96MF4 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 AC009117.1-201ENST00000563948 554 ntBASIC5.3□□□□□ -1.56
CCDC140Q96MF4 MIR4719-201ENST00000585233 84 ntBASIC5.3□□□□□ -1.56
CCDC140Q96MF4 AL136084.2-214ENST00000587726 716 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 MIR7515HG-250ENST00000592565 856 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms