Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 SNORA70.20-201ENST00000516848 126 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 HMGB1P42-201ENST00000532126 553 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 AC023538.1-201ENST00000534576 736 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC4.39□□□□□ -1.71
HOXA1P49639 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC4.39□□□□□ -1.71
HOXA1P49639 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC4.39□□□□□ -1.71
HOXA1P49639 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC4.39□□□□□ -1.71
HOXA1P49639 CSNK1A1P1-202ENST00000563423 981 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 AC245036.5-201ENST00000596330 847 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 AC063977.5-201ENST00000601044 974 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 AC025811.1-201ENST00000604312 472 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 AC079610.2-201ENST00000604818 690 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC4.39□□□□□ -1.71
HOXA1P49639 AC096586.1-201ENST00000610267 561 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC4.39□□□□□ -1.71
HOXA1P49639 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
HOXA1P49639 MIR6889-201ENST00000613185 59 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 AL121873.1-201ENST00000616013 524 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 AP000484.1-201ENST00000620067 1252 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 AC068057.2-201ENST00000624047 895 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 AL683826.1-201ENST00000624104 627 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 AC073593.1-201ENST00000624500 411 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC4.39□□□□□ -1.71
HOXA1P49639 AC119674.1-212ENST00000641155 993 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
HOXA1P49639 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.39□□□□□ -1.71
HOXA1P49639 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC4.39□□□□□ -1.71
HOXA1P49639 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC4.39□□□□□ -1.71
HOXA1P49639 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
HOXA1P49639 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
HOXA1P49639 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC4.39□□□□□ -1.71
HOXA1P49639 SCAMP1-206ENST00000618166 1358 ntTSL 2 BASIC4.39□□□□□ -1.71
HOXA1P49639 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
HOXA1P49639 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
HOXA1P49639 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
HOXA1P49639 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
HOXA1P49639 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HOXA1P49639 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HOXA1P49639 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.38□□□□□ -1.71
HOXA1P49639 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.38□□□□□ -1.71
HOXA1P49639 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HOXA1P49639 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
HOXA1P49639 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC4.38□□□□□ -1.71
HOXA1P49639 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
HOXA1P49639 RNA5SP273-201ENST00000362484 113 ntBASIC4.38□□□□□ -1.71
HOXA1P49639 PPCS-201ENST00000372556 984 ntTSL 2 BASIC4.38□□□□□ -1.71
HOXA1P49639 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
HOXA1P49639 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
HOXA1P49639 ADPRM-201ENST00000379774 1209 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
HOXA1P49639 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC4.38□□□□□ -1.71
HOXA1P49639 SNORD116-12-201ENST00000384468 92 ntBASIC4.38□□□□□ -1.71
HOXA1P49639 MIR551A-201ENST00000385042 96 ntBASIC4.38□□□□□ -1.71
HOXA1P49639 TAS2R15P-201ENST00000390674 928 ntBASIC4.38□□□□□ -1.71
HOXA1P49639 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
HOXA1P49639 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
HOXA1P49639 VN1R12P-201ENST00000403778 876 ntBASIC4.38□□□□□ -1.71
HOXA1P49639 RPL23AP48-201ENST00000406913 488 ntBASIC4.38□□□□□ -1.71
HOXA1P49639 MIR1275-201ENST00000408770 80 ntBASIC4.38□□□□□ -1.71
HOXA1P49639 BTF3P8-201ENST00000414577 526 ntBASIC4.38□□□□□ -1.71
HOXA1P49639 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC4.38□□□□□ -1.71
HOXA1P49639 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC4.38□□□□□ -1.71
HOXA1P49639 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HOXA1P49639 C1DP1-201ENST00000426049 402 ntBASIC4.38□□□□□ -1.71
HOXA1P49639 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC4.38□□□□□ -1.71
HOXA1P49639 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC4.38□□□□□ -1.71
HOXA1P49639 YWHAZP2-201ENST00000440317 728 ntBASIC4.38□□□□□ -1.71
HOXA1P49639 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC4.38□□□□□ -1.71
HOXA1P49639 ARL4AP3-201ENST00000441452 574 ntBASIC4.38□□□□□ -1.71
HOXA1P49639 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC4.38□□□□□ -1.71
HOXA1P49639 AC244505.3-201ENST00000454598 187 ntBASIC4.38□□□□□ -1.71
HOXA1P49639 RPL7P45-201ENST00000455851 743 ntBASIC4.38□□□□□ -1.71
HOXA1P49639 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HOXA1P49639 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC4.38□□□□□ -1.71
HOXA1P49639 NAP1L1P3-201ENST00000462291 880 ntBASIC4.38□□□□□ -1.71
HOXA1P49639 RPL6P9-201ENST00000466502 859 ntBASIC4.38□□□□□ -1.71
HOXA1P49639 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC4.38□□□□□ -1.71
HOXA1P49639 AC026414.1-201ENST00000504046 698 ntBASIC4.38□□□□□ -1.71
HOXA1P49639 BOLA3P3-201ENST00000505182 232 ntBASIC4.38□□□□□ -1.71
HOXA1P49639 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HOXA1P49639 AC109464.1-201ENST00000511091 819 ntBASIC4.38□□□□□ -1.71
HOXA1P49639 AC114781.3-201ENST00000512083 142 ntBASIC4.38□□□□□ -1.71
HOXA1P49639 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC4.38□□□□□ -1.71
HOXA1P49639 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC4.38□□□□□ -1.71
HOXA1P49639 NDUFS5P6-201ENST00000529136 295 ntBASIC4.38□□□□□ -1.71
HOXA1P49639 AC006518.2-201ENST00000542513 940 ntBASIC4.38□□□□□ -1.71
HOXA1P49639 AC006512.2-201ENST00000543250 486 ntBASIC4.38□□□□□ -1.71
HOXA1P49639 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC4.38□□□□□ -1.71
HOXA1P49639 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC4.38□□□□□ -1.71
HOXA1P49639 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC4.38□□□□□ -1.71
HOXA1P49639 AC092121.1-201ENST00000569452 202 ntBASIC4.38□□□□□ -1.71
HOXA1P49639 OR1E3-201ENST00000575608 948 ntBASIC4.38□□□□□ -1.71
HOXA1P49639 RBM22P1-201ENST00000578589 1214 ntBASIC4.38□□□□□ -1.71
HOXA1P49639 AP005403.1-201ENST00000579720 229 ntBASIC4.38□□□□□ -1.71
HOXA1P49639 AC011840.5-201ENST00000582125 771 ntBASIC4.38□□□□□ -1.71
HOXA1P49639 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC4.38□□□□□ -1.71
HOXA1P49639 ZNF486-202ENST00000597083 734 ntTSL 3 BASIC4.38□□□□□ -1.71
HOXA1P49639 AC113368.1-201ENST00000603736 382 ntBASIC4.38□□□□□ -1.71
HOXA1P49639 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC4.38□□□□□ -1.71
HOXA1P49639 AC024060.1-201ENST00000607052 494 ntBASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 132.3 ms