Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC7.2□□□□□ -1.26
CUX1P39880 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC7.2□□□□□ -1.26
CUX1P39880 RNU1-83P-201ENST00000363426 164 ntBASIC7.2□□□□□ -1.26
CUX1P39880 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC7.2□□□□□ -1.26
CUX1P39880 NMNAT1P2-201ENST00000435192 860 ntBASIC7.2□□□□□ -1.26
CUX1P39880 MRPL48P1-201ENST00000445390 636 ntBASIC7.2□□□□□ -1.26
CUX1P39880 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC7.2□□□□□ -1.26
CUX1P39880 RNA5SP230-201ENST00000517039 122 ntBASIC7.2□□□□□ -1.26
CUX1P39880 AC011462.3-201ENST00000598988 540 ntTSL 3 BASIC7.2□□□□□ -1.26
CUX1P39880 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC7.2□□□□□ -1.26
CUX1P39880 AP001157.1-201ENST00000550837 2339 ntBASIC7.2□□□□□ -1.26
CUX1P39880 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
CUX1P39880 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
CUX1P39880 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
CUX1P39880 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC7.19□□□□□ -1.26
CUX1P39880 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
CUX1P39880 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
CUX1P39880 AL669831.5-218ENST00000591702 1873 ntBASIC7.19□□□□□ -1.26
CUX1P39880 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC7.19□□□□□ -1.26
CUX1P39880 OR11H4-201ENST00000315409 1082 ntBASIC7.19□□□□□ -1.26
CUX1P39880 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC7.19□□□□□ -1.26
CUX1P39880 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC7.19□□□□□ -1.26
CUX1P39880 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC7.19□□□□□ -1.26
CUX1P39880 PRSS3P4-201ENST00000453323 162 ntBASIC7.19□□□□□ -1.26
CUX1P39880 EIF2S2P5-201ENST00000457635 968 ntBASIC7.19□□□□□ -1.26
CUX1P39880 AC022336.1-201ENST00000475510 337 ntBASIC7.19□□□□□ -1.26
CUX1P39880 TRMT10BP1-201ENST00000519377 943 ntBASIC7.19□□□□□ -1.26
CUX1P39880 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC7.19□□□□□ -1.26
CUX1P39880 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
CUX1P39880 AL161756.2-201ENST00000604597 246 ntBASIC7.19□□□□□ -1.26
CUX1P39880 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC7.19□□□□□ -1.26
CUX1P39880 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
CUX1P39880 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
CUX1P39880 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
CUX1P39880 AL627171.1-201ENST00000618845 1308 ntBASIC7.18□□□□□ -1.26
CUX1P39880 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC7.18□□□□□ -1.26
CUX1P39880 PTMAP2-201ENST00000397627 327 ntBASIC7.18□□□□□ -1.26
CUX1P39880 AL691449.1-201ENST00000426570 421 ntBASIC7.18□□□□□ -1.26
CUX1P39880 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC7.18□□□□□ -1.26
CUX1P39880 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC7.18□□□□□ -1.26
CUX1P39880 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC7.18□□□□□ -1.26
CUX1P39880 AF213884.1-201ENST00000488102 463 ntBASIC7.18□□□□□ -1.26
CUX1P39880 AC093815.1-201ENST00000508637 280 ntBASIC7.18□□□□□ -1.26
CUX1P39880 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC7.18□□□□□ -1.26
CUX1P39880 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC7.18□□□□□ -1.26
CUX1P39880 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
CUX1P39880 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC7.18□□□□□ -1.26
CUX1P39880 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
CUX1P39880 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC7.18□□□□□ -1.26
CUX1P39880 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC7.18□□□□□ -1.26
CUX1P39880 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC7.17□□□□□ -1.26
CUX1P39880 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC7.17□□□□□ -1.26
CUX1P39880 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
CUX1P39880 OR56B2P-201ENST00000317102 954 ntBASIC7.17□□□□□ -1.26
CUX1P39880 MIR921-201ENST00000401133 56 ntBASIC7.17□□□□□ -1.26
CUX1P39880 TBCAP1-201ENST00000436520 327 ntBASIC7.17□□□□□ -1.26
CUX1P39880 RNA5SP249-201ENST00000516127 99 ntBASIC7.17□□□□□ -1.26
CUX1P39880 GTF2IP22-201ENST00000554443 182 ntBASIC7.17□□□□□ -1.26
CUX1P39880 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC7.17□□□□□ -1.26
CUX1P39880 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC7.17□□□□□ -1.26
CUX1P39880 MUC5AC-201ENST00000621226 17448 ntAPPRIS P1 TSL 5 BASIC7.17□□□□□ -1.26
CUX1P39880 MIR6500-201ENST00000622700 86 ntBASIC7.17□□□□□ -1.26
CUX1P39880 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC7.17□□□□□ -1.26
CUX1P39880 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
CUX1P39880 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC7.17□□□□□ -1.26
CUX1P39880 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
CUX1P39880 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
CUX1P39880 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
CUX1P39880 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
CUX1P39880 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
CUX1P39880 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
CUX1P39880 SNORA73.2-201ENST00000364946 201 ntBASIC7.17□□□□□ -1.26
CUX1P39880 RNA5SP187-201ENST00000384400 119 ntBASIC7.17□□□□□ -1.26
CUX1P39880 PVALB-202ENST00000404171 422 ntTSL 2 BASIC7.17□□□□□ -1.26
CUX1P39880 AL035246.1-201ENST00000433554 1255 ntBASIC7.17□□□□□ -1.26
CUX1P39880 PPIAP13-201ENST00000434706 478 ntBASIC7.17□□□□□ -1.26
CUX1P39880 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC7.17□□□□□ -1.26
CUX1P39880 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC7.17□□□□□ -1.26
CUX1P39880 AL157884.3-201ENST00000448273 1184 ntBASIC7.17□□□□□ -1.26
CUX1P39880 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC7.17□□□□□ -1.26
CUX1P39880 AC026726.1-201ENST00000512859 601 ntBASIC7.17□□□□□ -1.26
CUX1P39880 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC7.17□□□□□ -1.26
CUX1P39880 OR5D2P-201ENST00000524390 911 ntBASIC7.17□□□□□ -1.26
CUX1P39880 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC7.17□□□□□ -1.26
CUX1P39880 AC005520.3-201ENST00000602874 370 ntBASIC7.17□□□□□ -1.26
CUX1P39880 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC7.17□□□□□ -1.26
CUX1P39880 AC069200.1-201ENST00000609511 323 ntBASIC7.17□□□□□ -1.26
CUX1P39880 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC7.16□□□□□ -1.26
CUX1P39880 AC092162.3-201ENST00000624511 1624 ntBASIC7.16□□□□□ -1.26
CUX1P39880 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC7.16□□□□□ -1.26
CUX1P39880 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
CUX1P39880 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC7.16□□□□□ -1.26
CUX1P39880 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC7.16□□□□□ -1.26
CUX1P39880 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC7.16□□□□□ -1.26
CUX1P39880 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC7.16□□□□□ -1.26
CUX1P39880 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
CUX1P39880 RNA5SP175-201ENST00000364275 119 ntBASIC7.16□□□□□ -1.26
CUX1P39880 MIR449B-201ENST00000384995 97 ntBASIC7.16□□□□□ -1.26
CUX1P39880 GOT2P5-201ENST00000433995 546 ntBASIC7.16□□□□□ -1.26
CUX1P39880 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC7.16□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 121.4 ms