Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 RPS26P13-201ENST00000419030 330 ntBASIC4.5□□□□□ -1.69
LMX1BO60663 MTND5P25-201ENST00000430499 799 ntBASIC4.5□□□□□ -1.69
LMX1BO60663 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC4.5□□□□□ -1.69
LMX1BO60663 FABP5P3-201ENST00000437960 408 ntBASIC4.5□□□□□ -1.69
LMX1BO60663 PA2G4P6-201ENST00000438325 1197 ntBASIC4.5□□□□□ -1.69
LMX1BO60663 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC4.5□□□□□ -1.69
LMX1BO60663 AC073648.4-201ENST00000442655 781 ntBASIC4.5□□□□□ -1.69
LMX1BO60663 SETD6P1-201ENST00000444575 317 ntBASIC4.5□□□□□ -1.69
LMX1BO60663 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC4.5□□□□□ -1.69
LMX1BO60663 VN1R40P-201ENST00000455196 941 ntBASIC4.5□□□□□ -1.69
LMX1BO60663 AC092691.2-201ENST00000461787 803 ntBASIC4.5□□□□□ -1.69
LMX1BO60663 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC4.5□□□□□ -1.69
LMX1BO60663 CREM-238ENST00000488741 651 ntTSL 2 BASIC4.5□□□□□ -1.69
LMX1BO60663 AC134050.1-201ENST00000495088 933 ntBASIC4.5□□□□□ -1.69
LMX1BO60663 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC4.5□□□□□ -1.69
LMX1BO60663 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC4.5□□□□□ -1.69
LMX1BO60663 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC4.5□□□□□ -1.69
LMX1BO60663 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC4.5□□□□□ -1.69
LMX1BO60663 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC4.5□□□□□ -1.69
LMX1BO60663 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
LMX1BO60663 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC4.5□□□□□ -1.69
LMX1BO60663 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC4.5□□□□□ -1.69
LMX1BO60663 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC4.5□□□□□ -1.69
LMX1BO60663 AL512310.9-201ENST00000553311 948 ntBASIC4.5□□□□□ -1.69
LMX1BO60663 MTCYBP23-201ENST00000558717 1102 ntBASIC4.5□□□□□ -1.69
LMX1BO60663 PDCD6IPP2-207ENST00000566321 1069 ntBASIC4.5□□□□□ -1.69
LMX1BO60663 AC106734.1-201ENST00000568646 663 ntBASIC4.5□□□□□ -1.69
LMX1BO60663 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC4.5□□□□□ -1.69
LMX1BO60663 AC011840.5-201ENST00000582125 771 ntBASIC4.5□□□□□ -1.69
LMX1BO60663 MIR4480-201ENST00000582492 71 ntBASIC4.5□□□□□ -1.69
LMX1BO60663 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC4.5□□□□□ -1.69
LMX1BO60663 AC095055.1-201ENST00000603472 1113 ntBASIC4.5□□□□□ -1.69
LMX1BO60663 AC002487.1-201ENST00000604565 994 ntBASIC4.5□□□□□ -1.69
LMX1BO60663 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
LMX1BO60663 VN1R9P-201ENST00000614184 867 ntBASIC4.5□□□□□ -1.69
LMX1BO60663 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC4.5□□□□□ -1.69
LMX1BO60663 AC021755.4-201ENST00000616620 456 ntBASIC4.5□□□□□ -1.69
LMX1BO60663 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC4.5□□□□□ -1.69
LMX1BO60663 CYP4F35P-202ENST00000636121 390 ntBASIC4.5□□□□□ -1.69
LMX1BO60663 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC4.5□□□□□ -1.69
LMX1BO60663 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.5□□□□□ -1.69
LMX1BO60663 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
LMX1BO60663 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC4.5□□□□□ -1.69
LMX1BO60663 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
LMX1BO60663 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC4.5□□□□□ -1.69
LMX1BO60663 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC4.49□□□□□ -1.69
LMX1BO60663 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC4.49□□□□□ -1.69
LMX1BO60663 ZNF90P1-201ENST00000480493 1951 ntBASIC4.49□□□□□ -1.69
LMX1BO60663 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
LMX1BO60663 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
LMX1BO60663 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.49□□□□□ -1.69
LMX1BO60663 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC4.49□□□□□ -1.69
LMX1BO60663 RNU4-4P-201ENST00000364588 130 ntBASIC4.49□□□□□ -1.69
LMX1BO60663 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC4.49□□□□□ -1.69
LMX1BO60663 RNU6-906P-201ENST00000384700 70 ntBASIC4.49□□□□□ -1.69
LMX1BO60663 MIR513B-201ENST00000385136 84 ntBASIC4.49□□□□□ -1.69
LMX1BO60663 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
LMX1BO60663 CHMP1B2P-201ENST00000399581 597 ntBASIC4.49□□□□□ -1.69
LMX1BO60663 AL109941.1-201ENST00000401925 229 ntBASIC4.49□□□□□ -1.69
LMX1BO60663 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC4.49□□□□□ -1.69
LMX1BO60663 AL390316.1-201ENST00000406279 553 ntBASIC4.49□□□□□ -1.69
LMX1BO60663 DNAJA1P4-201ENST00000406473 1166 ntBASIC4.49□□□□□ -1.69
LMX1BO60663 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC4.49□□□□□ -1.69
LMX1BO60663 RPL22P18-201ENST00000417197 377 ntBASIC4.49□□□□□ -1.69
LMX1BO60663 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC4.49□□□□□ -1.69
LMX1BO60663 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC4.49□□□□□ -1.69
LMX1BO60663 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC4.49□□□□□ -1.69
LMX1BO60663 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
LMX1BO60663 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC4.49□□□□□ -1.69
LMX1BO60663 HNRNPA3P4-201ENST00000427514 803 ntBASIC4.49□□□□□ -1.69
LMX1BO60663 AL160175.1-201ENST00000428124 247 ntBASIC4.49□□□□□ -1.69
LMX1BO60663 TXNL1P1-201ENST00000429528 554 ntBASIC4.49□□□□□ -1.69
LMX1BO60663 MTCO1P43-201ENST00000431831 488 ntBASIC4.49□□□□□ -1.69
LMX1BO60663 MTCYBP29-201ENST00000436327 1006 ntBASIC4.49□□□□□ -1.69
LMX1BO60663 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC4.49□□□□□ -1.69
LMX1BO60663 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4.49□□□□□ -1.69
LMX1BO60663 BUD31P2-201ENST00000449374 300 ntBASIC4.49□□□□□ -1.69
LMX1BO60663 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC4.49□□□□□ -1.69
LMX1BO60663 RPL7P6-201ENST00000480903 738 ntBASIC4.49□□□□□ -1.69
LMX1BO60663 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC4.49□□□□□ -1.69
LMX1BO60663 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
LMX1BO60663 SUMO1P1-201ENST00000497904 306 ntBASIC4.49□□□□□ -1.69
LMX1BO60663 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC4.49□□□□□ -1.69
LMX1BO60663 RNU6ATAC24P-201ENST00000516811 135 ntBASIC4.49□□□□□ -1.69
LMX1BO60663 AC013701.1-201ENST00000522657 465 ntBASIC4.49□□□□□ -1.69
LMX1BO60663 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC4.49□□□□□ -1.69
LMX1BO60663 AC092490.3-201ENST00000545370 572 ntBASIC4.49□□□□□ -1.69
LMX1BO60663 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC4.49□□□□□ -1.69
LMX1BO60663 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC4.49□□□□□ -1.69
LMX1BO60663 AC006349.1-201ENST00000555526 235 ntBASIC4.49□□□□□ -1.69
LMX1BO60663 AC009097.3-201ENST00000563557 1018 ntBASIC4.49□□□□□ -1.69
LMX1BO60663 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
LMX1BO60663 AC145350.1-201ENST00000567426 208 ntBASIC4.49□□□□□ -1.69
LMX1BO60663 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC4.49□□□□□ -1.69
LMX1BO60663 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC4.49□□□□□ -1.69
LMX1BO60663 MIR3934-201ENST00000579806 107 ntBASIC4.49□□□□□ -1.69
LMX1BO60663 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC4.49□□□□□ -1.69
LMX1BO60663 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC4.49□□□□□ -1.69
LMX1BO60663 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC4.49□□□□□ -1.69
LMX1BO60663 AC113368.1-201ENST00000603736 382 ntBASIC4.49□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms