Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC4.82□□□□□ -1.64
VPS39Q96JC1 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC4.82□□□□□ -1.64
VPS39Q96JC1 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC4.82□□□□□ -1.64
VPS39Q96JC1 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC4.82□□□□□ -1.64
VPS39Q96JC1 AP000894.4-201ENST00000610185 483 ntBASIC4.82□□□□□ -1.64
VPS39Q96JC1 AL121612.2-201ENST00000612261 482 ntBASIC4.82□□□□□ -1.64
VPS39Q96JC1 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC4.82□□□□□ -1.64
VPS39Q96JC1 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC4.82□□□□□ -1.64
VPS39Q96JC1 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC4.82□□□□□ -1.64
VPS39Q96JC1 ZNRD1ASP-221ENST00000637794 1074 ntBASIC4.82□□□□□ -1.64
VPS39Q96JC1 LINC01739-205ENST00000641890 573 ntBASIC4.82□□□□□ -1.64
VPS39Q96JC1 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.82□□□□□ -1.64
VPS39Q96JC1 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS39Q96JC1 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS39Q96JC1 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS39Q96JC1 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS39Q96JC1 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS39Q96JC1 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS39Q96JC1 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
VPS39Q96JC1 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC4.81□□□□□ -1.64
VPS39Q96JC1 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
VPS39Q96JC1 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
VPS39Q96JC1 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
VPS39Q96JC1 RPL23P2-201ENST00000320371 421 ntBASIC4.81□□□□□ -1.64
VPS39Q96JC1 RNU6-984P-201ENST00000363236 109 ntBASIC4.81□□□□□ -1.64
VPS39Q96JC1 AP002530.1-201ENST00000405705 684 ntBASIC4.81□□□□□ -1.64
VPS39Q96JC1 GTF2IP5-201ENST00000414608 731 ntBASIC4.81□□□□□ -1.64
VPS39Q96JC1 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS39Q96JC1 AL138785.1-201ENST00000425821 331 ntBASIC4.81□□□□□ -1.64
VPS39Q96JC1 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.81□□□□□ -1.64
VPS39Q96JC1 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS39Q96JC1 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS39Q96JC1 AL606490.7-201ENST00000433136 191 ntBASIC4.81□□□□□ -1.64
VPS39Q96JC1 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC4.81□□□□□ -1.64
VPS39Q96JC1 RPS26P2-201ENST00000440331 348 ntBASIC4.81□□□□□ -1.64
VPS39Q96JC1 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC4.81□□□□□ -1.64
VPS39Q96JC1 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC4.81□□□□□ -1.64
VPS39Q96JC1 SUMO2P1-206ENST00000445436 284 ntBASIC4.81□□□□□ -1.64
VPS39Q96JC1 TDGF1P1-201ENST00000445734 527 ntBASIC4.81□□□□□ -1.64
VPS39Q96JC1 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS39Q96JC1 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.81□□□□□ -1.64
VPS39Q96JC1 AC004980.4-201ENST00000513375 203 ntBASIC4.81□□□□□ -1.64
VPS39Q96JC1 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC4.81□□□□□ -1.64
VPS39Q96JC1 RNU6-491P-201ENST00000516099 110 ntBASIC4.81□□□□□ -1.64
VPS39Q96JC1 RNA5SP92-201ENST00000516437 110 ntBASIC4.81□□□□□ -1.64
VPS39Q96JC1 SCARNA21.2-201ENST00000516600 166 ntBASIC4.81□□□□□ -1.64
VPS39Q96JC1 RN7SKP66-201ENST00000516681 231 ntBASIC4.81□□□□□ -1.64
VPS39Q96JC1 HMGB1P19-201ENST00000517578 577 ntBASIC4.81□□□□□ -1.64
VPS39Q96JC1 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS39Q96JC1 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS39Q96JC1 OR10G5P-201ENST00000532733 358 ntBASIC4.81□□□□□ -1.64
VPS39Q96JC1 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC4.81□□□□□ -1.64
VPS39Q96JC1 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC4.81□□□□□ -1.64
VPS39Q96JC1 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
VPS39Q96JC1 DCTN5-207ENST00000568272 523 ntTSL 2 BASIC4.81□□□□□ -1.64
VPS39Q96JC1 AL121932.1-201ENST00000605542 214 ntBASIC4.81□□□□□ -1.64
VPS39Q96JC1 AC135803.1-201ENST00000608748 565 ntBASIC4.81□□□□□ -1.64
VPS39Q96JC1 AP001521.2-201ENST00000608772 546 ntBASIC4.81□□□□□ -1.64
VPS39Q96JC1 AL512624.1-201ENST00000613638 469 ntBASIC4.81□□□□□ -1.64
VPS39Q96JC1 EIF3FP1-201ENST00000613970 806 ntBASIC4.81□□□□□ -1.64
VPS39Q96JC1 AC123768.4-201ENST00000616244 701 ntBASIC4.81□□□□□ -1.64
VPS39Q96JC1 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS39Q96JC1 AC099654.2-201ENST00000433031 1980 ntBASIC4.81□□□□□ -1.64
VPS39Q96JC1 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.81□□□□□ -1.64
VPS39Q96JC1 HSPA8P18-201ENST00000439846 1928 ntBASIC4.81□□□□□ -1.64
VPS39Q96JC1 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.81□□□□□ -1.64
VPS39Q96JC1 MAPK10-263ENST00000641052 4307 ntBASIC4.81□□□□□ -1.64
VPS39Q96JC1 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.81□□□□□ -1.64
VPS39Q96JC1 AL136164.3-201ENST00000624429 3978 ntBASIC4.8□□□□□ -1.64
VPS39Q96JC1 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC4.8□□□□□ -1.64
VPS39Q96JC1 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
VPS39Q96JC1 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
VPS39Q96JC1 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS39Q96JC1 AL445487.1-201ENST00000415694 1580 ntBASIC4.8□□□□□ -1.64
VPS39Q96JC1 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS39Q96JC1 RNU6-31P-201ENST00000384388 108 ntBASIC4.8□□□□□ -1.64
VPS39Q96JC1 SNORA70-201ENST00000384436 135 ntBASIC4.8□□□□□ -1.64
VPS39Q96JC1 MIR7-1-201ENST00000384871 110 ntBASIC4.8□□□□□ -1.64
VPS39Q96JC1 RNU6-244P-201ENST00000391028 104 ntBASIC4.8□□□□□ -1.64
VPS39Q96JC1 ARL4AP5-201ENST00000404372 599 ntBASIC4.8□□□□□ -1.64
VPS39Q96JC1 RPL31P52-201ENST00000407532 367 ntBASIC4.8□□□□□ -1.64
VPS39Q96JC1 GSTM3P2-201ENST00000412746 530 ntBASIC4.8□□□□□ -1.64
VPS39Q96JC1 AC013404.1-201ENST00000413068 249 ntBASIC4.8□□□□□ -1.64
VPS39Q96JC1 GJA6P-201ENST00000415117 1042 ntBASIC4.8□□□□□ -1.64
VPS39Q96JC1 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS39Q96JC1 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS39Q96JC1 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
VPS39Q96JC1 AC093414.1-201ENST00000434712 514 ntBASIC4.8□□□□□ -1.64
VPS39Q96JC1 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC4.8□□□□□ -1.64
VPS39Q96JC1 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC4.8□□□□□ -1.64
VPS39Q96JC1 AL162388.1-201ENST00000450912 352 ntBASIC4.8□□□□□ -1.64
VPS39Q96JC1 ATP5A1P7-201ENST00000453978 1279 ntBASIC4.8□□□□□ -1.64
VPS39Q96JC1 EIF4A2P2-201ENST00000455776 1070 ntBASIC4.8□□□□□ -1.64
VPS39Q96JC1 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC4.8□□□□□ -1.64
VPS39Q96JC1 RPL5P30-201ENST00000465511 891 ntBASIC4.8□□□□□ -1.64
VPS39Q96JC1 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS39Q96JC1 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC4.8□□□□□ -1.64
VPS39Q96JC1 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS39Q96JC1 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS39Q96JC1 MAL2-201ENST00000522112 573 ntTSL 4 BASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 94.5 ms