Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC4.09□□□□□ -1.75
H3F3AP84243 AC073429.2-201ENST00000569694 1444 ntBASIC4.09□□□□□ -1.75
H3F3AP84243 AC108467.2-201ENST00000617640 1597 ntBASIC4.09□□□□□ -1.75
H3F3AP84243 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
H3F3AP84243 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC4.09□□□□□ -1.76
H3F3AP84243 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC4.09□□□□□ -1.76
H3F3AP84243 AL450326.2-201ENST00000421913 1962 ntBASIC4.09□□□□□ -1.76
H3F3AP84243 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.09□□□□□ -1.76
H3F3AP84243 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.09□□□□□ -1.76
H3F3AP84243 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
H3F3AP84243 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
H3F3AP84243 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
H3F3AP84243 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
H3F3AP84243 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC4.08□□□□□ -1.76
H3F3AP84243 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
H3F3AP84243 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
H3F3AP84243 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
H3F3AP84243 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
H3F3AP84243 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
H3F3AP84243 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.08□□□□□ -1.76
H3F3AP84243 AC019050.1-201ENST00000418508 492 ntBASIC4.08□□□□□ -1.76
H3F3AP84243 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC4.08□□□□□ -1.76
H3F3AP84243 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
H3F3AP84243 RAD23BP1-201ENST00000421404 1227 ntBASIC4.08□□□□□ -1.76
H3F3AP84243 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
H3F3AP84243 RPL21P91-201ENST00000429231 479 ntBASIC4.08□□□□□ -1.76
H3F3AP84243 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
H3F3AP84243 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
H3F3AP84243 AL138878.2-201ENST00000440581 1241 ntBASIC4.08□□□□□ -1.76
H3F3AP84243 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC4.08□□□□□ -1.76
H3F3AP84243 HSPE1P22-201ENST00000456856 327 ntBASIC4.08□□□□□ -1.76
H3F3AP84243 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC4.08□□□□□ -1.76
H3F3AP84243 KRTAP5-14P-201ENST00000502328 121 ntBASIC4.08□□□□□ -1.76
H3F3AP84243 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC4.08□□□□□ -1.76
H3F3AP84243 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC4.08□□□□□ -1.76
H3F3AP84243 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
H3F3AP84243 AC137768.1-201ENST00000549998 553 ntBASIC4.08□□□□□ -1.76
H3F3AP84243 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC4.08□□□□□ -1.76
H3F3AP84243 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC4.08□□□□□ -1.76
H3F3AP84243 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.08□□□□□ -1.76
H3F3AP84243 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.08□□□□□ -1.76
H3F3AP84243 AC234782.5-201ENST00000617723 324 ntBASIC4.08□□□□□ -1.76
H3F3AP84243 AP002967.1-201ENST00000624203 539 ntBASIC4.08□□□□□ -1.76
H3F3AP84243 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
H3F3AP84243 AC091046.3-201ENST00000631455 1574 ntBASIC4.08□□□□□ -1.76
H3F3AP84243 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
H3F3AP84243 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
H3F3AP84243 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC4.08□□□□□ -1.76
H3F3AP84243 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.08□□□□□ -1.76
H3F3AP84243 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
H3F3AP84243 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.07□□□□□ -1.76
H3F3AP84243 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
H3F3AP84243 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
H3F3AP84243 CPHL1P-201ENST00000461341 3407 ntBASIC4.07□□□□□ -1.76
H3F3AP84243 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.07□□□□□ -1.76
H3F3AP84243 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC4.07□□□□□ -1.76
H3F3AP84243 LINC00622-201ENST00000562811 1570 ntBASIC4.07□□□□□ -1.76
H3F3AP84243 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
H3F3AP84243 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.07□□□□□ -1.76
H3F3AP84243 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
H3F3AP84243 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
H3F3AP84243 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
H3F3AP84243 CYB5AP4-201ENST00000396692 399 ntBASIC4.07□□□□□ -1.76
H3F3AP84243 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC4.07□□□□□ -1.76
H3F3AP84243 RPS16P5-201ENST00000406501 404 ntBASIC4.07□□□□□ -1.76
H3F3AP84243 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC4.07□□□□□ -1.76
H3F3AP84243 VDAC1P9-201ENST00000412766 841 ntBASIC4.07□□□□□ -1.76
H3F3AP84243 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC4.07□□□□□ -1.76
H3F3AP84243 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC4.07□□□□□ -1.76
H3F3AP84243 AC007686.1-201ENST00000488511 463 ntBASIC4.07□□□□□ -1.76
H3F3AP84243 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC4.07□□□□□ -1.76
H3F3AP84243 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC4.07□□□□□ -1.76
H3F3AP84243 AP002981.1-201ENST00000517692 975 ntBASIC4.07□□□□□ -1.76
H3F3AP84243 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC4.07□□□□□ -1.76
H3F3AP84243 AP001781.1-201ENST00000530977 207 ntBASIC4.07□□□□□ -1.76
H3F3AP84243 GSTP1P1-201ENST00000548078 319 ntBASIC4.07□□□□□ -1.76
H3F3AP84243 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC4.07□□□□□ -1.76
H3F3AP84243 ADAD1P2-201ENST00000588476 646 ntBASIC4.07□□□□□ -1.76
H3F3AP84243 RPL7P50-201ENST00000600588 727 ntBASIC4.07□□□□□ -1.76
H3F3AP84243 BPIFA4P-203ENST00000603168 689 ntBASIC4.07□□□□□ -1.76
H3F3AP84243 LINC00901.1-201ENST00000617252 152 ntBASIC4.07□□□□□ -1.76
H3F3AP84243 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
H3F3AP84243 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC4.07□□□□□ -1.76
H3F3AP84243 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
H3F3AP84243 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.07□□□□□ -1.76
H3F3AP84243 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.07□□□□□ -1.76
H3F3AP84243 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
H3F3AP84243 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.07□□□□□ -1.76
H3F3AP84243 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
H3F3AP84243 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.07□□□□□ -1.76
H3F3AP84243 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
H3F3AP84243 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
H3F3AP84243 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
H3F3AP84243 AL672167.1-205ENST00000641112 3080 ntBASIC4.06□□□□□ -1.76
H3F3AP84243 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
H3F3AP84243 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
H3F3AP84243 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
H3F3AP84243 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
H3F3AP84243 MIR192-201ENST00000384915 110 ntBASIC4.06□□□□□ -1.76
H3F3AP84243 RPS3AP23-201ENST00000401762 784 ntBASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 10.8 ms