Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.21□□□□□ -1.74
FOXA1P55317 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
FOXA1P55317 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.21□□□□□ -1.74
FOXA1P55317 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
FOXA1P55317 MIR513A2-201ENST00000385249 127 ntBASIC4.21□□□□□ -1.74
FOXA1P55317 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.21□□□□□ -1.74
FOXA1P55317 XIST-201ENST00000416330 750 ntTSL 2 BASIC4.21□□□□□ -1.74
FOXA1P55317 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.21□□□□□ -1.74
FOXA1P55317 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC4.21□□□□□ -1.74
FOXA1P55317 AC092447.2-201ENST00000435487 669 ntBASIC4.21□□□□□ -1.74
FOXA1P55317 AL589765.3-201ENST00000446084 462 ntBASIC4.21□□□□□ -1.74
FOXA1P55317 AC053481.1-201ENST00000467217 306 ntBASIC4.21□□□□□ -1.74
FOXA1P55317 AC091544.1-201ENST00000484702 348 ntBASIC4.21□□□□□ -1.74
FOXA1P55317 AC108145.1-201ENST00000503770 153 ntBASIC4.21□□□□□ -1.74
FOXA1P55317 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC4.21□□□□□ -1.74
FOXA1P55317 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC4.21□□□□□ -1.74
FOXA1P55317 AP000827.1-201ENST00000527814 258 ntBASIC4.21□□□□□ -1.74
FOXA1P55317 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
FOXA1P55317 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC4.21□□□□□ -1.74
FOXA1P55317 AL352979.3-201ENST00000553515 247 ntBASIC4.21□□□□□ -1.74
FOXA1P55317 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC4.21□□□□□ -1.74
FOXA1P55317 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.21□□□□□ -1.74
FOXA1P55317 AP002884.5-201ENST00000595053 1132 ntBASIC4.21□□□□□ -1.74
FOXA1P55317 AL354984.3-201ENST00000604803 325 ntBASIC4.21□□□□□ -1.74
FOXA1P55317 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC4.21□□□□□ -1.74
FOXA1P55317 Z98755.1-201ENST00000407015 1384 ntBASIC4.21□□□□□ -1.74
FOXA1P55317 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.21□□□□□ -1.74
FOXA1P55317 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
FOXA1P55317 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
FOXA1P55317 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
FOXA1P55317 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.2□□□□□ -1.74
FOXA1P55317 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
FOXA1P55317 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.2□□□□□ -1.74
FOXA1P55317 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.2□□□□□ -1.74
FOXA1P55317 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
FOXA1P55317 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
FOXA1P55317 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.2□□□□□ -1.74
FOXA1P55317 MIR3065-201ENST00000390137 79 ntBASIC4.2□□□□□ -1.74
FOXA1P55317 AL583835.1-201ENST00000399570 407 ntBASIC4.2□□□□□ -1.74
FOXA1P55317 AL356968.2-201ENST00000412769 1257 ntBASIC4.2□□□□□ -1.74
FOXA1P55317 UQCRBP1-201ENST00000421129 336 ntBASIC4.2□□□□□ -1.74
FOXA1P55317 OR2X1P-201ENST00000421144 687 ntBASIC4.2□□□□□ -1.74
FOXA1P55317 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.2□□□□□ -1.74
FOXA1P55317 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC4.2□□□□□ -1.74
FOXA1P55317 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC4.2□□□□□ -1.74
FOXA1P55317 AC073648.4-201ENST00000442655 781 ntBASIC4.2□□□□□ -1.74
FOXA1P55317 AC011753.3-201ENST00000443436 406 ntBASIC4.2□□□□□ -1.74
FOXA1P55317 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC4.2□□□□□ -1.74
FOXA1P55317 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC4.2□□□□□ -1.74
FOXA1P55317 RPL21P126-201ENST00000470049 478 ntBASIC4.2□□□□□ -1.74
FOXA1P55317 RN7SL826P-201ENST00000479724 288 ntBASIC4.2□□□□□ -1.74
FOXA1P55317 AC231760.1-201ENST00000498002 260 ntBASIC4.2□□□□□ -1.74
FOXA1P55317 AC006499.6-201ENST00000511169 607 ntBASIC4.2□□□□□ -1.74
FOXA1P55317 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC4.2□□□□□ -1.74
FOXA1P55317 IGKV1-32-201ENST00000519290 311 ntBASIC4.2□□□□□ -1.74
FOXA1P55317 IGLVVI-25-1-201ENST00000521893 249 ntBASIC4.2□□□□□ -1.74
FOXA1P55317 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.2□□□□□ -1.74
FOXA1P55317 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.2□□□□□ -1.74
FOXA1P55317 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC4.2□□□□□ -1.74
FOXA1P55317 AC069240.1-201ENST00000548774 375 ntBASIC4.2□□□□□ -1.74
FOXA1P55317 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC4.2□□□□□ -1.74
FOXA1P55317 EIF4A2P1-201ENST00000587313 1063 ntBASIC4.2□□□□□ -1.74
FOXA1P55317 AC008782.1-201ENST00000603386 430 ntBASIC4.2□□□□□ -1.74
FOXA1P55317 AC079587.1-201ENST00000603846 277 ntBASIC4.2□□□□□ -1.74
FOXA1P55317 AC244517.3-201ENST00000616254 1235 ntBASIC4.2□□□□□ -1.74
FOXA1P55317 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC4.2□□□□□ -1.74
FOXA1P55317 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.2□□□□□ -1.74
FOXA1P55317 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC4.2□□□□□ -1.74
FOXA1P55317 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
FOXA1P55317 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.2□□□□□ -1.74
FOXA1P55317 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC4.2□□□□□ -1.74
FOXA1P55317 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
FOXA1P55317 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
FOXA1P55317 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
FOXA1P55317 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
FOXA1P55317 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.2□□□□□ -1.74
FOXA1P55317 MAPK10-304ENST00000641341 3984 ntBASIC4.2□□□□□ -1.74
FOXA1P55317 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
FOXA1P55317 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
FOXA1P55317 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
FOXA1P55317 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
FOXA1P55317 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.19□□□□□ -1.74
FOXA1P55317 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
FOXA1P55317 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC4.19□□□□□ -1.74
FOXA1P55317 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
FOXA1P55317 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
FOXA1P55317 RN7SKP247-201ENST00000411094 308 ntBASIC4.19□□□□□ -1.74
FOXA1P55317 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC4.19□□□□□ -1.74
FOXA1P55317 RPEP3-201ENST00000425462 676 ntBASIC4.19□□□□□ -1.74
FOXA1P55317 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
FOXA1P55317 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC4.19□□□□□ -1.74
FOXA1P55317 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC4.19□□□□□ -1.74
FOXA1P55317 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC4.19□□□□□ -1.74
FOXA1P55317 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.19□□□□□ -1.74
FOXA1P55317 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC4.19□□□□□ -1.74
FOXA1P55317 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.19□□□□□ -1.74
FOXA1P55317 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.19□□□□□ -1.74
FOXA1P55317 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC4.19□□□□□ -1.74
FOXA1P55317 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC4.19□□□□□ -1.74
FOXA1P55317 AP000859.1-201ENST00000525536 307 ntBASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms