Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC019176.2-201ENST00000611579 315 ntBASIC5.35□□□□□ -1.55
BRCA1P38398 OR8G7P-201ENST00000616658 848 ntBASIC5.35□□□□□ -1.55
BRCA1P38398 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC5.35□□□□□ -1.55
BRCA1P38398 AL591135.1-201ENST00000401578 5914 ntBASIC5.35□□□□□ -1.55
BRCA1P38398 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
BRCA1P38398 USP45-204ENST00000369233 2514 ntTSL 5 BASIC5.35□□□□□ -1.55
BRCA1P38398 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
BRCA1P38398 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.35□□□□□ -1.55
BRCA1P38398 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
BRCA1P38398 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
BRCA1P38398 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC5.35□□□□□ -1.55
BRCA1P38398 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
BRCA1P38398 AC007738.1-201ENST00000413892 348 ntBASIC5.34□□□□□ -1.55
BRCA1P38398 AC115285.1-201ENST00000424879 736 ntBASIC5.34□□□□□ -1.55
BRCA1P38398 AC010374.1-201ENST00000503762 1237 ntBASIC5.34□□□□□ -1.55
BRCA1P38398 AC006499.5-201ENST00000505037 514 ntBASIC5.34□□□□□ -1.55
BRCA1P38398 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC5.34□□□□□ -1.55
BRCA1P38398 AL592156.1-201ENST00000508758 304 ntBASIC5.34□□□□□ -1.55
BRCA1P38398 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC5.34□□□□□ -1.55
BRCA1P38398 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC5.34□□□□□ -1.55
BRCA1P38398 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC5.34□□□□□ -1.55
BRCA1P38398 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC5.34□□□□□ -1.55
BRCA1P38398 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC5.34□□□□□ -1.55
BRCA1P38398 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC5.34□□□□□ -1.55
BRCA1P38398 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.34□□□□□ -1.55
BRCA1P38398 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC5.34□□□□□ -1.55
BRCA1P38398 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
BRCA1P38398 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC5.34□□□□□ -1.55
BRCA1P38398 AL929601.4-201ENST00000613011 1341 ntBASIC5.34□□□□□ -1.55
BRCA1P38398 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
BRCA1P38398 OR51B4-201ENST00000380224 933 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
BRCA1P38398 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
BRCA1P38398 RNU1-63P-201ENST00000383902 164 ntBASIC5.34□□□□□ -1.55
BRCA1P38398 NDUFB4P4-201ENST00000404822 243 ntBASIC5.34□□□□□ -1.55
BRCA1P38398 AC013429.2-201ENST00000418798 781 ntBASIC5.34□□□□□ -1.55
BRCA1P38398 EIF4HP2-201ENST00000424380 563 ntBASIC5.34□□□□□ -1.55
BRCA1P38398 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC5.34□□□□□ -1.55
BRCA1P38398 AC012671.1-201ENST00000451912 203 ntBASIC5.34□□□□□ -1.55
BRCA1P38398 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC5.34□□□□□ -1.55
BRCA1P38398 PARP4P3-201ENST00000510265 317 ntBASIC5.34□□□□□ -1.55
BRCA1P38398 VN1R92P-201ENST00000598511 928 ntBASIC5.34□□□□□ -1.55
BRCA1P38398 FP325313.1-201ENST00000638228 703 ntBASIC5.34□□□□□ -1.55
BRCA1P38398 AP001029.2-203ENST00000589795 4910 ntBASIC5.34□□□□□ -1.55
BRCA1P38398 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
BRCA1P38398 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.56
BRCA1P38398 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC5.33□□□□□ -1.56
BRCA1P38398 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5.33□□□□□ -1.56
BRCA1P38398 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
BRCA1P38398 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
BRCA1P38398 SNORA5A-201ENST00000384111 134 ntBASIC5.33□□□□□ -1.56
BRCA1P38398 U8.11-201ENST00000384699 133 ntBASIC5.33□□□□□ -1.56
BRCA1P38398 U8.12-201ENST00000384701 133 ntBASIC5.33□□□□□ -1.56
BRCA1P38398 MIR7-3-201ENST00000384898 110 ntBASIC5.33□□□□□ -1.56
BRCA1P38398 AC108032.1-201ENST00000416706 207 ntBASIC5.33□□□□□ -1.56
BRCA1P38398 CYCSP10-201ENST00000417973 294 ntBASIC5.33□□□□□ -1.56
BRCA1P38398 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC5.33□□□□□ -1.56
BRCA1P38398 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC5.33□□□□□ -1.56
BRCA1P38398 U8.18-201ENST00000459285 133 ntBASIC5.33□□□□□ -1.56
BRCA1P38398 ENSA-211ENST00000503345 793 ntTSL 3 BASIC5.33□□□□□ -1.56
BRCA1P38398 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
BRCA1P38398 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC5.33□□□□□ -1.56
BRCA1P38398 IFITM8P-201ENST00000522529 394 ntBASIC5.33□□□□□ -1.56
BRCA1P38398 IGKV2D-19-201ENST00000523346 262 ntBASIC5.33□□□□□ -1.56
BRCA1P38398 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC5.33□□□□□ -1.56
BRCA1P38398 RERGL-203ENST00000538724 973 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
BRCA1P38398 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC5.33□□□□□ -1.56
BRCA1P38398 MIR5685-201ENST00000579080 79 ntBASIC5.33□□□□□ -1.56
BRCA1P38398 OR7A8P-201ENST00000595427 913 ntBASIC5.33□□□□□ -1.56
BRCA1P38398 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC5.33□□□□□ -1.56
BRCA1P38398 AC023762.1-201ENST00000603280 584 ntBASIC5.33□□□□□ -1.56
BRCA1P38398 AC079587.1-201ENST00000603846 277 ntBASIC5.33□□□□□ -1.56
BRCA1P38398 BNIP3P19-201ENST00000605397 577 ntBASIC5.33□□□□□ -1.56
BRCA1P38398 AC090912.3-201ENST00000609775 533 ntBASIC5.33□□□□□ -1.56
BRCA1P38398 LINC02341-201ENST00000637043 824 ntTSL 3 BASIC5.33□□□□□ -1.56
BRCA1P38398 AC009093.8-201ENST00000641769 292 ntBASIC5.33□□□□□ -1.56
BRCA1P38398 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC5.33□□□□□ -1.56
BRCA1P38398 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
BRCA1P38398 DRP2-204ENST00000538510 6852 ntAPPRIS P3 TSL 2 BASIC5.33□□□□□ -1.56
BRCA1P38398 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.33□□□□□ -1.56
BRCA1P38398 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
BRCA1P38398 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
BRCA1P38398 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
BRCA1P38398 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
BRCA1P38398 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
BRCA1P38398 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
BRCA1P38398 RPL7P49-201ENST00000471402 708 ntBASIC5.32□□□□□ -1.56
BRCA1P38398 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC5.32□□□□□ -1.56
BRCA1P38398 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC5.32□□□□□ -1.56
BRCA1P38398 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC5.32□□□□□ -1.56
BRCA1P38398 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
BRCA1P38398 PSMC6-218ENST00000606149 1560 ntAPPRIS ALT1 TSL 1 (best) BASIC5.32□□□□□ -1.56
BRCA1P38398 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
BRCA1P38398 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
BRCA1P38398 ADAM5-202ENST00000399789 1942 ntBASIC5.32□□□□□ -1.56
BRCA1P38398 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
BRCA1P38398 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC5.32□□□□□ -1.56
BRCA1P38398 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
BRCA1P38398 SNORA74C-2-201ENST00000411179 201 ntBASIC5.32□□□□□ -1.56
BRCA1P38398 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
BRCA1P38398 AC069277.1-205ENST00000432743 630 ntTSL 5 BASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms