Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC5.42□□□□□ -1.54
COL5A3P25940 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC5.42□□□□□ -1.54
COL5A3P25940 AC069304.1-201ENST00000491593 704 ntBASIC5.42□□□□□ -1.54
COL5A3P25940 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
COL5A3P25940 MTND4LP31-201ENST00000514859 294 ntBASIC5.42□□□□□ -1.54
COL5A3P25940 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC5.42□□□□□ -1.54
COL5A3P25940 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL5A3P25940 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC5.42□□□□□ -1.54
COL5A3P25940 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC5.42□□□□□ -1.54
COL5A3P25940 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC5.42□□□□□ -1.54
COL5A3P25940 AL160290.3-201ENST00000604869 165 ntBASIC5.42□□□□□ -1.54
COL5A3P25940 AL121772.2-201ENST00000614331 297 ntBASIC5.42□□□□□ -1.54
COL5A3P25940 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC5.42□□□□□ -1.54
COL5A3P25940 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL5A3P25940 PCNX1-201ENST00000304743 12919 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL5A3P25940 FBXL13-208ENST00000456695 1605 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL5A3P25940 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
COL5A3P25940 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL5A3P25940 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL5A3P25940 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
COL5A3P25940 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL5A3P25940 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC5.41□□□□□ -1.54
COL5A3P25940 AC126323.6-202ENST00000568092 3511 ntBASIC5.41□□□□□ -1.54
COL5A3P25940 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL5A3P25940 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL5A3P25940 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL5A3P25940 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL5A3P25940 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL5A3P25940 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC5.41□□□□□ -1.54
COL5A3P25940 RPL37P1-201ENST00000432310 284 ntBASIC5.41□□□□□ -1.54
COL5A3P25940 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL5A3P25940 MRPL48P1-201ENST00000445390 636 ntBASIC5.41□□□□□ -1.54
COL5A3P25940 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL5A3P25940 ATP1B1P1-201ENST00000509767 915 ntBASIC5.41□□□□□ -1.54
COL5A3P25940 RNA5SP230-201ENST00000517039 122 ntBASIC5.41□□□□□ -1.54
COL5A3P25940 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC5.41□□□□□ -1.54
COL5A3P25940 NPM1P5-201ENST00000557228 838 ntBASIC5.41□□□□□ -1.54
COL5A3P25940 OCLM-201ENST00000574641 884 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
COL5A3P25940 AC008739.3-201ENST00000603262 127 ntBASIC5.41□□□□□ -1.54
COL5A3P25940 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC5.41□□□□□ -1.54
COL5A3P25940 MIR6500-201ENST00000622700 86 ntBASIC5.41□□□□□ -1.54
COL5A3P25940 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL5A3P25940 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL5A3P25940 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL5A3P25940 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
COL5A3P25940 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL5A3P25940 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL5A3P25940 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL5A3P25940 JAKMIP2-205ENST00000507386 5915 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL5A3P25940 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC5.41□□□□□ -1.54
COL5A3P25940 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL5A3P25940 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL5A3P25940 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL5A3P25940 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL5A3P25940 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL5A3P25940 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL5A3P25940 AC009506.2-201ENST00000420635 840 ntBASIC5.4□□□□□ -1.54
COL5A3P25940 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC5.4□□□□□ -1.54
COL5A3P25940 RPL36AP13-201ENST00000457490 317 ntBASIC5.4□□□□□ -1.54
COL5A3P25940 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC5.4□□□□□ -1.54
COL5A3P25940 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC5.4□□□□□ -1.54
COL5A3P25940 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC5.4□□□□□ -1.54
COL5A3P25940 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC5.4□□□□□ -1.54
COL5A3P25940 IMMP1LP1-201ENST00000605170 488 ntBASIC5.4□□□□□ -1.54
COL5A3P25940 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.54
COL5A3P25940 AC010608.2-201ENST00000624830 470 ntBASIC5.4□□□□□ -1.54
COL5A3P25940 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL5A3P25940 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
COL5A3P25940 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
COL5A3P25940 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
COL5A3P25940 CRB1-209ENST00000535699 5140 ntTSL 5 BASIC5.4□□□□□ -1.54
COL5A3P25940 AC116667.1-201ENST00000604855 2072 ntBASIC5.4□□□□□ -1.54
COL5A3P25940 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC5.4□□□□□ -1.55
COL5A3P25940 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
COL5A3P25940 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
COL5A3P25940 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.55
COL5A3P25940 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
COL5A3P25940 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
COL5A3P25940 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
COL5A3P25940 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC5.4□□□□□ -1.55
COL5A3P25940 AC104623.2-202ENST00000623477 4002 ntBASIC5.4□□□□□ -1.55
COL5A3P25940 AL356968.2-201ENST00000412769 1257 ntBASIC5.4□□□□□ -1.55
COL5A3P25940 OR8F1P-201ENST00000425243 930 ntBASIC5.4□□□□□ -1.55
COL5A3P25940 CYCSP43-201ENST00000438233 310 ntBASIC5.4□□□□□ -1.55
COL5A3P25940 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC5.4□□□□□ -1.55
COL5A3P25940 RPL23AP81-201ENST00000455252 467 ntBASIC5.4□□□□□ -1.55
COL5A3P25940 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
COL5A3P25940 EIF2S2P5-201ENST00000457635 968 ntBASIC5.4□□□□□ -1.55
COL5A3P25940 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC5.4□□□□□ -1.55
COL5A3P25940 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC5.4□□□□□ -1.55
COL5A3P25940 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC5.4□□□□□ -1.55
COL5A3P25940 AC234782.5-201ENST00000617723 324 ntBASIC5.4□□□□□ -1.55
COL5A3P25940 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
COL5A3P25940 AC092162.3-201ENST00000624511 1624 ntBASIC5.39□□□□□ -1.55
COL5A3P25940 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.39□□□□□ -1.55
COL5A3P25940 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC5.39□□□□□ -1.55
COL5A3P25940 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL5A3P25940 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
COL5A3P25940 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL5A3P25940 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms