Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 RMDN2-202ENST00000354545 1381 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
HMGB1P09429 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
HMGB1P09429 RNA5SP510-201ENST00000364697 99 ntBASIC6.49□□□□□ -1.37
HMGB1P09429 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC6.49□□□□□ -1.37
HMGB1P09429 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
HMGB1P09429 PPIAP9-201ENST00000403866 498 ntBASIC6.49□□□□□ -1.37
HMGB1P09429 AL024507.1-201ENST00000412741 274 ntBASIC6.49□□□□□ -1.37
HMGB1P09429 OR51A3P-201ENST00000413596 924 ntBASIC6.49□□□□□ -1.37
HMGB1P09429 GJA6P-201ENST00000415117 1042 ntBASIC6.49□□□□□ -1.37
HMGB1P09429 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC6.49□□□□□ -1.37
HMGB1P09429 IPPKP1-201ENST00000422501 768 ntBASIC6.49□□□□□ -1.37
HMGB1P09429 AL354766.1-201ENST00000423396 542 ntBASIC6.49□□□□□ -1.37
HMGB1P09429 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC6.49□□□□□ -1.37
HMGB1P09429 FMO7P-201ENST00000436045 768 ntBASIC6.49□□□□□ -1.37
HMGB1P09429 AC064862.4-201ENST00000442180 334 ntBASIC6.49□□□□□ -1.37
HMGB1P09429 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC6.49□□□□□ -1.37
HMGB1P09429 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC6.49□□□□□ -1.37
HMGB1P09429 EIF4A1P6-201ENST00000448133 1210 ntBASIC6.49□□□□□ -1.37
HMGB1P09429 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC6.49□□□□□ -1.37
HMGB1P09429 AC097173.1-201ENST00000505862 819 ntBASIC6.49□□□□□ -1.37
HMGB1P09429 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC6.49□□□□□ -1.37
HMGB1P09429 YWHABP2-201ENST00000540201 713 ntBASIC6.49□□□□□ -1.37
HMGB1P09429 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC6.49□□□□□ -1.37
HMGB1P09429 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
HMGB1P09429 CENPUP2-201ENST00000555897 1186 ntBASIC6.49□□□□□ -1.37
HMGB1P09429 AL390726.5-202ENST00000564800 256 ntBASIC6.49□□□□□ -1.37
HMGB1P09429 AC008507.2-201ENST00000588402 1176 ntBASIC6.49□□□□□ -1.37
HMGB1P09429 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC6.49□□□□□ -1.37
HMGB1P09429 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC6.49□□□□□ -1.37
HMGB1P09429 HSPE1P14-201ENST00000605812 302 ntBASIC6.49□□□□□ -1.37
HMGB1P09429 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
HMGB1P09429 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC6.49□□□□□ -1.37
HMGB1P09429 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
HMGB1P09429 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
HMGB1P09429 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC6.49□□□□□ -1.37
HMGB1P09429 ABCC13-202ENST00000463099 3842 ntBASIC6.49□□□□□ -1.37
HMGB1P09429 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC6.48□□□□□ -1.37
HMGB1P09429 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC6.48□□□□□ -1.37
HMGB1P09429 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC6.48□□□□□ -1.37
HMGB1P09429 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC6.48□□□□□ -1.37
HMGB1P09429 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
HMGB1P09429 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
HMGB1P09429 OR10J6P-201ENST00000289731 930 ntBASIC6.48□□□□□ -1.37
HMGB1P09429 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
HMGB1P09429 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
HMGB1P09429 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
HMGB1P09429 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC6.48□□□□□ -1.37
HMGB1P09429 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC6.48□□□□□ -1.37
HMGB1P09429 RNU6-444P-201ENST00000383988 108 ntBASIC6.48□□□□□ -1.37
HMGB1P09429 SFR1P1-201ENST00000403720 688 ntBASIC6.48□□□□□ -1.37
HMGB1P09429 AC073264.1-201ENST00000411508 416 ntBASIC6.48□□□□□ -1.37
HMGB1P09429 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC6.48□□□□□ -1.37
HMGB1P09429 FTH1P6-201ENST00000430768 320 ntBASIC6.48□□□□□ -1.37
HMGB1P09429 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC6.48□□□□□ -1.37
HMGB1P09429 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC6.48□□□□□ -1.37
HMGB1P09429 GAPDHP36-201ENST00000480688 918 ntBASIC6.48□□□□□ -1.37
HMGB1P09429 B4GALNT2P1-201ENST00000508857 307 ntBASIC6.48□□□□□ -1.37
HMGB1P09429 AC091819.1-201ENST00000518330 630 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
HMGB1P09429 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC6.48□□□□□ -1.37
HMGB1P09429 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC6.48□□□□□ -1.37
HMGB1P09429 AP004609.2-201ENST00000532177 190 ntBASIC6.48□□□□□ -1.37
HMGB1P09429 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC6.48□□□□□ -1.37
HMGB1P09429 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC6.48□□□□□ -1.37
HMGB1P09429 MTCYBP28-201ENST00000566728 1132 ntBASIC6.48□□□□□ -1.37
HMGB1P09429 AC126365.2-201ENST00000580630 379 ntBASIC6.48□□□□□ -1.37
HMGB1P09429 MIR4505-201ENST00000582238 73 ntBASIC6.48□□□□□ -1.37
HMGB1P09429 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC6.48□□□□□ -1.37
HMGB1P09429 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
HMGB1P09429 GMFG-212ENST00000602185 423 ntTSL 3 BASIC6.48□□□□□ -1.37
HMGB1P09429 HCG18-243ENST00000602498 327 ntTSL 3 BASIC6.48□□□□□ -1.37
HMGB1P09429 AL390816.3-201ENST00000604527 1066 ntBASIC6.48□□□□□ -1.37
HMGB1P09429 AC002487.1-201ENST00000604565 994 ntBASIC6.48□□□□□ -1.37
HMGB1P09429 AC099785.1-201ENST00000605697 437 ntBASIC6.48□□□□□ -1.37
HMGB1P09429 AL118522.2-201ENST00000616045 615 ntBASIC6.48□□□□□ -1.37
HMGB1P09429 AC004232.3-201ENST00000622977 525 ntBASIC6.48□□□□□ -1.37
HMGB1P09429 AC068620.4-201ENST00000636730 1182 ntBASIC6.48□□□□□ -1.37
HMGB1P09429 AC106858.1-201ENST00000637497 429 ntBASIC6.48□□□□□ -1.37
HMGB1P09429 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC6.48□□□□□ -1.37
HMGB1P09429 SGO1P1-201ENST00000603525 1447 ntBASIC6.48□□□□□ -1.37
HMGB1P09429 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
HMGB1P09429 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
HMGB1P09429 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC6.48□□□□□ -1.37
HMGB1P09429 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC6.48□□□□□ -1.37
HMGB1P09429 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
HMGB1P09429 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
HMGB1P09429 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC6.47□□□□□ -1.37
HMGB1P09429 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
HMGB1P09429 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC6.47□□□□□ -1.37
HMGB1P09429 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
HMGB1P09429 OR1L1-202ENST00000373686 1083 ntBASIC6.47□□□□□ -1.37
HMGB1P09429 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC6.47□□□□□ -1.37
HMGB1P09429 MCTS2P-201ENST00000394552 546 ntBASIC6.47□□□□□ -1.37
HMGB1P09429 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC6.47□□□□□ -1.37
HMGB1P09429 GSTA8P-201ENST00000404253 637 ntBASIC6.47□□□□□ -1.37
HMGB1P09429 ZNF603P-201ENST00000405613 487 ntBASIC6.47□□□□□ -1.37
HMGB1P09429 GPS2P1-201ENST00000411761 986 ntBASIC6.47□□□□□ -1.37
HMGB1P09429 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
HMGB1P09429 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC6.47□□□□□ -1.37
HMGB1P09429 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC6.47□□□□□ -1.37
HMGB1P09429 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC6.47□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 135.7 ms