Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 AC231760.1-201ENST00000498002 260 ntBASIC5.67□□□□□ -1.5
TDP1Q9NUW8 AC090058.1-201ENST00000498788 435 ntBASIC5.67□□□□□ -1.5
TDP1Q9NUW8 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 PDCL2P2-201ENST00000533651 189 ntBASIC5.67□□□□□ -1.5
TDP1Q9NUW8 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 ERP27-202ENST00000540097 993 ntTSL 2 BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 AP005403.1-201ENST00000579720 229 ntBASIC5.67□□□□□ -1.5
TDP1Q9NUW8 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 MRPS35P3-201ENST00000603189 709 ntBASIC5.67□□□□□ -1.5
TDP1Q9NUW8 IGKV1OR2-9-201ENST00000603957 287 ntBASIC5.67□□□□□ -1.5
TDP1Q9NUW8 IGKV1OR2-11-201ENST00000604120 287 ntBASIC5.67□□□□□ -1.5
TDP1Q9NUW8 AL445222.1-201ENST00000607259 628 ntBASIC5.67□□□□□ -1.5
TDP1Q9NUW8 AP000238.1-201ENST00000608759 426 ntBASIC5.67□□□□□ -1.5
TDP1Q9NUW8 AC004948.1-201ENST00000609858 672 ntBASIC5.67□□□□□ -1.5
TDP1Q9NUW8 AC109583.2-201ENST00000617367 129 ntBASIC5.67□□□□□ -1.5
TDP1Q9NUW8 AC007490.1-201ENST00000624321 703 ntBASIC5.67□□□□□ -1.5
TDP1Q9NUW8 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 AL137100.1-201ENST00000556703 1620 ntBASIC5.66□□□□□ -1.5
TDP1Q9NUW8 AC011493.1-201ENST00000596753 1632 ntBASIC5.66□□□□□ -1.5
TDP1Q9NUW8 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 GNG5P2-201ENST00000372054 207 ntBASIC5.66□□□□□ -1.5
TDP1Q9NUW8 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 SNORD116-1-201ENST00000384335 95 ntBASIC5.66□□□□□ -1.5
TDP1Q9NUW8 MIR525-201ENST00000384978 85 ntBASIC5.66□□□□□ -1.5
TDP1Q9NUW8 MIR1302-8-201ENST00000408342 128 ntBASIC5.66□□□□□ -1.5
TDP1Q9NUW8 LSM5-205ENST00000409952 687 ntTSL 4 BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 AC093655.2-201ENST00000425735 631 ntBASIC5.66□□□□□ -1.5
TDP1Q9NUW8 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 GSTM5P1-201ENST00000434751 660 ntBASIC5.66□□□□□ -1.5
TDP1Q9NUW8 CYCSP11-201ENST00000436426 315 ntBASIC5.66□□□□□ -1.5
TDP1Q9NUW8 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 AL035090.1-201ENST00000454835 332 ntBASIC5.66□□□□□ -1.5
TDP1Q9NUW8 RPS18P6-201ENST00000476880 458 ntBASIC5.66□□□□□ -1.5
TDP1Q9NUW8 RN7SL826P-201ENST00000479724 288 ntBASIC5.66□□□□□ -1.5
TDP1Q9NUW8 AC126121.1-201ENST00000482313 553 ntBASIC5.66□□□□□ -1.5
TDP1Q9NUW8 RN7SL808P-201ENST00000496066 299 ntBASIC5.66□□□□□ -1.5
TDP1Q9NUW8 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 RNU6-941P-201ENST00000516346 108 ntBASIC5.66□□□□□ -1.5
TDP1Q9NUW8 SEPT10P1-201ENST00000517342 1162 ntBASIC5.66□□□□□ -1.5
TDP1Q9NUW8 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 AP003461.1-201ENST00000528866 78 ntBASIC5.66□□□□□ -1.5
TDP1Q9NUW8 AP002812.4-201ENST00000532139 286 ntBASIC5.66□□□□□ -1.5
TDP1Q9NUW8 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 AC044913.1-201ENST00000557200 430 ntBASIC5.66□□□□□ -1.5
TDP1Q9NUW8 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 AL592148.2-201ENST00000612210 372 ntBASIC5.66□□□□□ -1.5
TDP1Q9NUW8 AC107075.1-201ENST00000613695 314 ntBASIC5.66□□□□□ -1.5
TDP1Q9NUW8 AC068870.2-201ENST00000620635 389 ntBASIC5.66□□□□□ -1.5
TDP1Q9NUW8 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 OR4F13P-202ENST00000560066 2054 ntBASIC5.66□□□□□ -1.5
TDP1Q9NUW8 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 MTCO1P6-201ENST00000481192 1384 ntBASIC5.66□□□□□ -1.5
TDP1Q9NUW8 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
TDP1Q9NUW8 AC015799.1-201ENST00000622996 3122 ntBASIC5.65□□□□□ -1.5
TDP1Q9NUW8 AC073429.2-201ENST00000569694 1444 ntBASIC5.65□□□□□ -1.5
TDP1Q9NUW8 AL158152.1-201ENST00000602652 1435 ntBASIC5.65□□□□□ -1.5
TDP1Q9NUW8 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
TDP1Q9NUW8 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.65□□□□□ -1.5
TDP1Q9NUW8 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.65□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms