Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 TEX41-300ENST00000631048 69 ntTSL 5 BASIC7.28□□□□□ -1.24
CUX1P39880 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
CUX1P39880 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC7.28□□□□□ -1.24
CUX1P39880 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
CUX1P39880 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
CUX1P39880 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC7.28□□□□□ -1.24
CUX1P39880 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC7.28□□□□□ -1.24
CUX1P39880 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
CUX1P39880 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
CUX1P39880 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC7.27□□□□□ -1.24
CUX1P39880 AL359922.3-201ENST00000624779 1670 ntBASIC7.27□□□□□ -1.24
CUX1P39880 SNORD46.1-201ENST00000364139 104 ntBASIC7.27□□□□□ -1.25
CUX1P39880 SNORA62.3-201ENST00000365110 153 ntBASIC7.27□□□□□ -1.25
CUX1P39880 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC7.27□□□□□ -1.25
CUX1P39880 RNU6-761P-201ENST00000384148 107 ntBASIC7.27□□□□□ -1.25
CUX1P39880 SNORA5.1-201ENST00000384275 131 ntBASIC7.27□□□□□ -1.25
CUX1P39880 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC7.27□□□□□ -1.25
CUX1P39880 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC7.27□□□□□ -1.25
CUX1P39880 AC115285.1-201ENST00000424879 736 ntBASIC7.27□□□□□ -1.25
CUX1P39880 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC7.27□□□□□ -1.25
CUX1P39880 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC7.27□□□□□ -1.25
CUX1P39880 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC7.27□□□□□ -1.25
CUX1P39880 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC7.27□□□□□ -1.25
CUX1P39880 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
CUX1P39880 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC7.27□□□□□ -1.25
CUX1P39880 AC109446.4-201ENST00000623235 2755 ntBASIC7.27□□□□□ -1.25
CUX1P39880 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC7.27□□□□□ -1.25
CUX1P39880 ARHGAP42P1-201ENST00000507474 1976 ntBASIC7.27□□□□□ -1.25
CUX1P39880 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC7.27□□□□□ -1.25
CUX1P39880 MAPK10-349ENST00000641767 3661 ntBASIC7.27□□□□□ -1.25
CUX1P39880 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC7.27□□□□□ -1.25
CUX1P39880 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC7.27□□□□□ -1.25
CUX1P39880 SNORA11.2-201ENST00000408318 127 ntBASIC7.27□□□□□ -1.25
CUX1P39880 AL356968.2-201ENST00000412769 1257 ntBASIC7.27□□□□□ -1.25
CUX1P39880 AMMECR1LP1-201ENST00000415152 841 ntBASIC7.27□□□□□ -1.25
CUX1P39880 AC018644.1-201ENST00000429934 551 ntBASIC7.27□□□□□ -1.25
CUX1P39880 CDY14P-201ENST00000431260 1014 ntBASIC7.27□□□□□ -1.25
CUX1P39880 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC7.27□□□□□ -1.25
CUX1P39880 CDY12P-201ENST00000440679 1015 ntBASIC7.27□□□□□ -1.25
CUX1P39880 AL512326.1-201ENST00000443050 721 ntBASIC7.27□□□□□ -1.25
CUX1P39880 SERPINA7P1-201ENST00000443077 631 ntBASIC7.27□□□□□ -1.25
CUX1P39880 CDY13P-201ENST00000445813 1015 ntBASIC7.27□□□□□ -1.25
CUX1P39880 CDY23P-201ENST00000451661 1014 ntBASIC7.27□□□□□ -1.25
CUX1P39880 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC7.27□□□□□ -1.25
CUX1P39880 NPM1P21-201ENST00000513394 762 ntBASIC7.27□□□□□ -1.25
CUX1P39880 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC7.27□□□□□ -1.25
CUX1P39880 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC7.27□□□□□ -1.25
CUX1P39880 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC7.27□□□□□ -1.25
CUX1P39880 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC7.27□□□□□ -1.25
CUX1P39880 MIR4660-201ENST00000583549 74 ntBASIC7.27□□□□□ -1.25
CUX1P39880 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC7.27□□□□□ -1.25
CUX1P39880 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC7.27□□□□□ -1.25
CUX1P39880 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
CUX1P39880 AC011755.1-201ENST00000623763 2049 ntBASIC7.26□□□□□ -1.25
CUX1P39880 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
CUX1P39880 ZNF573-202ENST00000357309 2124 ntTSL 5 BASIC7.26□□□□□ -1.25
CUX1P39880 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC7.26□□□□□ -1.25
CUX1P39880 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
CUX1P39880 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC7.26□□□□□ -1.25
CUX1P39880 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
CUX1P39880 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
CUX1P39880 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC7.26□□□□□ -1.25
CUX1P39880 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
CUX1P39880 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC7.26□□□□□ -1.25
CUX1P39880 AL607077.1-201ENST00000401718 499 ntBASIC7.26□□□□□ -1.25
CUX1P39880 RN7SKP167-201ENST00000411047 285 ntBASIC7.26□□□□□ -1.25
CUX1P39880 HMGB3P5-201ENST00000428894 612 ntBASIC7.26□□□□□ -1.25
CUX1P39880 AL031963.1-201ENST00000447644 695 ntTSL 3 BASIC7.26□□□□□ -1.25
CUX1P39880 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC7.26□□□□□ -1.25
CUX1P39880 AC128716.1-201ENST00000475129 166 ntBASIC7.26□□□□□ -1.25
CUX1P39880 RN7SL812P-201ENST00000493791 279 ntBASIC7.26□□□□□ -1.25
CUX1P39880 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC7.26□□□□□ -1.25
CUX1P39880 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC7.26□□□□□ -1.25
CUX1P39880 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC7.26□□□□□ -1.25
CUX1P39880 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC7.26□□□□□ -1.25
CUX1P39880 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
CUX1P39880 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC7.26□□□□□ -1.25
CUX1P39880 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
CUX1P39880 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
CUX1P39880 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
CUX1P39880 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC7.25□□□□□ -1.25
CUX1P39880 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
CUX1P39880 RNU6ATAC-201ENST00000408749 126 ntBASIC7.25□□□□□ -1.25
CUX1P39880 AC093578.1-201ENST00000415219 368 ntBASIC7.25□□□□□ -1.25
CUX1P39880 OR8F1P-201ENST00000425243 930 ntBASIC7.25□□□□□ -1.25
CUX1P39880 AC007389.2-201ENST00000434630 306 ntBASIC7.25□□□□□ -1.25
CUX1P39880 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
CUX1P39880 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC7.25□□□□□ -1.25
CUX1P39880 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC7.25□□□□□ -1.25
CUX1P39880 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC7.25□□□□□ -1.25
CUX1P39880 ATP1B1P1-201ENST00000509767 915 ntBASIC7.25□□□□□ -1.25
CUX1P39880 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
CUX1P39880 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC7.25□□□□□ -1.25
CUX1P39880 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC7.25□□□□□ -1.25
CUX1P39880 RPL23AP97-201ENST00000568955 471 ntBASIC7.25□□□□□ -1.25
CUX1P39880 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC7.25□□□□□ -1.25
CUX1P39880 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
CUX1P39880 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
CUX1P39880 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC7.25□□□□□ -1.25
CUX1P39880 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC7.25□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms