Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC011462.3-201ENST00000598988 540 ntTSL 3 BASIC5.69□□□□□ -1.5
COL18A1P39060 AC008739.3-201ENST00000603262 127 ntBASIC5.69□□□□□ -1.5
COL18A1P39060 IMMP1LP1-201ENST00000605170 488 ntBASIC5.69□□□□□ -1.5
COL18A1P39060 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC5.69□□□□□ -1.5
COL18A1P39060 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
COL18A1P39060 NF1-201ENST00000356175 12362 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL18A1P39060 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL18A1P39060 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL18A1P39060 USP45-204ENST00000369233 2514 ntTSL 5 BASIC5.69□□□□□ -1.5
COL18A1P39060 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
COL18A1P39060 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL18A1P39060 ALMS1-207ENST00000614410 11700 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
COL18A1P39060 CHST12-201ENST00000258711 15979 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL18A1P39060 BCORP1-203ENST00000513194 5093 ntBASIC5.68□□□□□ -1.5
COL18A1P39060 OR56B2P-201ENST00000317102 954 ntBASIC5.68□□□□□ -1.5
COL18A1P39060 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL18A1P39060 AL080315.1-201ENST00000406055 466 ntBASIC5.68□□□□□ -1.5
COL18A1P39060 RN7SKP159-201ENST00000410657 292 ntBASIC5.68□□□□□ -1.5
COL18A1P39060 AF213884.1-201ENST00000488102 463 ntBASIC5.68□□□□□ -1.5
COL18A1P39060 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC5.68□□□□□ -1.5
COL18A1P39060 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC5.68□□□□□ -1.5
COL18A1P39060 AC017100.2-201ENST00000584628 355 ntBASIC5.68□□□□□ -1.5
COL18A1P39060 AC010608.2-201ENST00000624830 470 ntBASIC5.68□□□□□ -1.5
COL18A1P39060 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL18A1P39060 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC5.68□□□□□ -1.5
COL18A1P39060 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL18A1P39060 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL18A1P39060 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL18A1P39060 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL18A1P39060 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL18A1P39060 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL18A1P39060 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL18A1P39060 AC068870.3-201ENST00000625077 2536 ntBASIC5.68□□□□□ -1.5
COL18A1P39060 SNORA63.1-201ENST00000362493 131 ntBASIC5.67□□□□□ -1.5
COL18A1P39060 AL356968.2-201ENST00000412769 1257 ntBASIC5.67□□□□□ -1.5
COL18A1P39060 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC5.67□□□□□ -1.5
COL18A1P39060 MRPL48P1-201ENST00000445390 636 ntBASIC5.67□□□□□ -1.5
COL18A1P39060 AL500522.2-201ENST00000448562 343 ntBASIC5.67□□□□□ -1.5
COL18A1P39060 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC5.67□□□□□ -1.5
COL18A1P39060 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL18A1P39060 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC5.67□□□□□ -1.5
COL18A1P39060 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC5.67□□□□□ -1.5
COL18A1P39060 AC108145.1-201ENST00000503770 153 ntBASIC5.67□□□□□ -1.5
COL18A1P39060 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC5.67□□□□□ -1.5
COL18A1P39060 MTND4LP31-201ENST00000514859 294 ntBASIC5.67□□□□□ -1.5
COL18A1P39060 RNA5SP249-201ENST00000516127 99 ntBASIC5.67□□□□□ -1.5
COL18A1P39060 SOX9-AS1-211ENST00000533179 460 ntTSL 3 BASIC5.67□□□□□ -1.5
COL18A1P39060 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC5.67□□□□□ -1.5
COL18A1P39060 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC5.67□□□□□ -1.5
COL18A1P39060 NPM1P5-201ENST00000557228 838 ntBASIC5.67□□□□□ -1.5
COL18A1P39060 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC5.67□□□□□ -1.5
COL18A1P39060 AL160290.3-201ENST00000604869 165 ntBASIC5.67□□□□□ -1.5
COL18A1P39060 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC5.67□□□□□ -1.5
COL18A1P39060 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL18A1P39060 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL18A1P39060 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL18A1P39060 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
COL18A1P39060 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC5.67□□□□□ -1.5
COL18A1P39060 AP001157.1-201ENST00000550837 2339 ntBASIC5.67□□□□□ -1.5
COL18A1P39060 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL18A1P39060 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC5.67□□□□□ -1.5
COL18A1P39060 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL18A1P39060 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL18A1P39060 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL18A1P39060 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL18A1P39060 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
COL18A1P39060 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
COL18A1P39060 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC5.67□□□□□ -1.5
COL18A1P39060 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL18A1P39060 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC5.67□□□□□ -1.5
COL18A1P39060 RPL23AP81-201ENST00000455252 467 ntBASIC5.67□□□□□ -1.5
COL18A1P39060 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC5.67□□□□□ -1.5
COL18A1P39060 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC5.67□□□□□ -1.5
COL18A1P39060 AC026726.1-201ENST00000512859 601 ntBASIC5.67□□□□□ -1.5
COL18A1P39060 IFITM8P-201ENST00000522529 394 ntBASIC5.67□□□□□ -1.5
COL18A1P39060 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC5.67□□□□□ -1.5
COL18A1P39060 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC5.67□□□□□ -1.5
COL18A1P39060 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC5.67□□□□□ -1.5
COL18A1P39060 TEX41-300ENST00000631048 69 ntTSL 5 BASIC5.67□□□□□ -1.5
COL18A1P39060 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL18A1P39060 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL18A1P39060 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL18A1P39060 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC5.66□□□□□ -1.5
COL18A1P39060 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5.66□□□□□ -1.5
COL18A1P39060 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
COL18A1P39060 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC5.66□□□□□ -1.5
COL18A1P39060 WNK3-201ENST00000354646 11341 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL18A1P39060 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC5.66□□□□□ -1.5
COL18A1P39060 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC5.66□□□□□ -1.5
COL18A1P39060 RNU1-83P-201ENST00000363426 164 ntBASIC5.66□□□□□ -1.5
COL18A1P39060 MIR921-201ENST00000401133 56 ntBASIC5.66□□□□□ -1.5
COL18A1P39060 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC5.66□□□□□ -1.5
COL18A1P39060 GOT2P5-201ENST00000433995 546 ntBASIC5.66□□□□□ -1.5
COL18A1P39060 EIF2S2P5-201ENST00000457635 968 ntBASIC5.66□□□□□ -1.5
COL18A1P39060 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC5.66□□□□□ -1.5
COL18A1P39060 NPM1P21-201ENST00000513394 762 ntBASIC5.66□□□□□ -1.5
COL18A1P39060 AC007991.1-201ENST00000522680 631 ntBASIC5.66□□□□□ -1.5
COL18A1P39060 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC5.66□□□□□ -1.5
COL18A1P39060 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC5.66□□□□□ -1.5
COL18A1P39060 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms