Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
HOXC9P31274 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
HOXC9P31274 RNU6-386P-201ENST00000362650 107 ntBASIC5.97□□□□□ -1.45
HOXC9P31274 Y_RNA.62-201ENST00000362840 99 ntBASIC5.97□□□□□ -1.45
HOXC9P31274 RPS26P8-201ENST00000393490 348 ntBASIC5.97□□□□□ -1.45
HOXC9P31274 RN7SKP27-201ENST00000410684 333 ntBASIC5.97□□□□□ -1.45
HOXC9P31274 AC017078.1-201ENST00000416146 368 ntBASIC5.97□□□□□ -1.45
HOXC9P31274 AC114878.1-201ENST00000441166 358 ntBASIC5.97□□□□□ -1.45
HOXC9P31274 TDGF1P1-201ENST00000445734 527 ntBASIC5.97□□□□□ -1.45
HOXC9P31274 MTND2P3-201ENST00000452458 470 ntBASIC5.97□□□□□ -1.45
HOXC9P31274 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
HOXC9P31274 AC023424.1-201ENST00000496058 459 ntBASIC5.97□□□□□ -1.45
HOXC9P31274 AC108475.1-201ENST00000507880 950 ntBASIC5.97□□□□□ -1.45
HOXC9P31274 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
HOXC9P31274 RNU6-943P-201ENST00000516960 98 ntBASIC5.97□□□□□ -1.45
HOXC9P31274 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC5.97□□□□□ -1.45
HOXC9P31274 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC5.97□□□□□ -1.45
HOXC9P31274 AC090515.3-201ENST00000560431 315 ntBASIC5.97□□□□□ -1.45
HOXC9P31274 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC5.97□□□□□ -1.45
HOXC9P31274 KATNBL1P1-201ENST00000605192 748 ntBASIC5.97□□□□□ -1.45
HOXC9P31274 AC007620.3-201ENST00000608131 497 ntBASIC5.97□□□□□ -1.45
HOXC9P31274 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.97□□□□□ -1.45
HOXC9P31274 AC003001.2-201ENST00000616294 831 ntBASIC5.97□□□□□ -1.45
HOXC9P31274 uc_338.13-201ENST00000618243 179 ntBASIC5.97□□□□□ -1.45
HOXC9P31274 MIR492-201ENST00000638676 116 ntBASIC5.97□□□□□ -1.45
HOXC9P31274 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
HOXC9P31274 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
HOXC9P31274 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
HOXC9P31274 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC5.97□□□□□ -1.45
HOXC9P31274 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC5.97□□□□□ -1.45
HOXC9P31274 AC112198.2-201ENST00000426589 6996 ntBASIC5.97□□□□□ -1.45
HOXC9P31274 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC5.97□□□□□ -1.45
HOXC9P31274 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC5.96□□□□□ -1.45
HOXC9P31274 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
HOXC9P31274 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.96□□□□□ -1.45
HOXC9P31274 AL355852.1-201ENST00000454081 1771 ntBASIC5.96□□□□□ -1.46
HOXC9P31274 FTO-203ENST00000460382 1517 ntTSL 5 BASIC5.96□□□□□ -1.46
HOXC9P31274 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC5.96□□□□□ -1.46
HOXC9P31274 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
HOXC9P31274 NRBF2P2-201ENST00000413087 861 ntBASIC5.96□□□□□ -1.46
HOXC9P31274 AC009506.2-201ENST00000420635 840 ntBASIC5.96□□□□□ -1.46
HOXC9P31274 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
HOXC9P31274 Z85994.2-201ENST00000434327 452 ntBASIC5.96□□□□□ -1.46
HOXC9P31274 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC5.96□□□□□ -1.46
HOXC9P31274 RPL23AP52-201ENST00000439311 478 ntBASIC5.96□□□□□ -1.46
HOXC9P31274 AC012671.1-201ENST00000451912 203 ntBASIC5.96□□□□□ -1.46
HOXC9P31274 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC5.96□□□□□ -1.46
HOXC9P31274 RN7SL691P-201ENST00000494487 301 ntBASIC5.96□□□□□ -1.46
HOXC9P31274 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC5.96□□□□□ -1.46
HOXC9P31274 AK4P6-201ENST00000505168 528 ntBASIC5.96□□□□□ -1.46
HOXC9P31274 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC5.96□□□□□ -1.46
HOXC9P31274 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
HOXC9P31274 ARL6IP1P1-201ENST00000545836 610 ntBASIC5.96□□□□□ -1.46
HOXC9P31274 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC5.96□□□□□ -1.46
HOXC9P31274 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC5.96□□□□□ -1.46
HOXC9P31274 ADAD1P2-201ENST00000588476 646 ntBASIC5.96□□□□□ -1.46
HOXC9P31274 AC107993.1-201ENST00000591343 684 ntBASIC5.96□□□□□ -1.46
HOXC9P31274 AC130352.1-201ENST00000602979 661 ntBASIC5.96□□□□□ -1.46
HOXC9P31274 BPIFA4P-203ENST00000603168 689 ntBASIC5.96□□□□□ -1.46
HOXC9P31274 AC023762.1-201ENST00000603280 584 ntBASIC5.96□□□□□ -1.46
HOXC9P31274 AC015914.2-201ENST00000618167 288 ntBASIC5.96□□□□□ -1.46
HOXC9P31274 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC5.96□□□□□ -1.46
HOXC9P31274 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
HOXC9P31274 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.96□□□□□ -1.46
HOXC9P31274 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC5.96□□□□□ -1.46
HOXC9P31274 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC5.96□□□□□ -1.46
HOXC9P31274 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
HOXC9P31274 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
HOXC9P31274 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.95□□□□□ -1.46
HOXC9P31274 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
HOXC9P31274 AL359922.3-201ENST00000624779 1670 ntBASIC5.95□□□□□ -1.46
HOXC9P31274 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC5.95□□□□□ -1.46
HOXC9P31274 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC5.95□□□□□ -1.46
HOXC9P31274 THAP12P8-201ENST00000447914 2115 ntBASIC5.95□□□□□ -1.46
HOXC9P31274 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.95□□□□□ -1.46
HOXC9P31274 AC017079.1-201ENST00000333650 415 ntBASIC5.95□□□□□ -1.46
HOXC9P31274 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
HOXC9P31274 AC019070.1-201ENST00000415008 1024 ntBASIC5.95□□□□□ -1.46
HOXC9P31274 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC5.95□□□□□ -1.46
HOXC9P31274 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC5.95□□□□□ -1.46
HOXC9P31274 ALG13-211ENST00000473389 693 ntTSL 2 BASIC5.95□□□□□ -1.46
HOXC9P31274 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.95□□□□□ -1.46
HOXC9P31274 AL513548.1-201ENST00000562904 1724 ntBASIC5.95□□□□□ -1.46
HOXC9P31274 AC106785.1-201ENST00000565935 262 ntBASIC5.95□□□□□ -1.46
HOXC9P31274 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC5.95□□□□□ -1.46
HOXC9P31274 AC090181.2-201ENST00000602975 672 ntBASIC5.95□□□□□ -1.46
HOXC9P31274 AC079587.1-201ENST00000603846 277 ntBASIC5.95□□□□□ -1.46
HOXC9P31274 AL161637.1-201ENST00000622380 412 ntBASIC5.95□□□□□ -1.46
HOXC9P31274 TEX41-256ENST00000626411 368 ntTSL 5 BASIC5.95□□□□□ -1.46
HOXC9P31274 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
HOXC9P31274 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
HOXC9P31274 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
HOXC9P31274 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC5.95□□□□□ -1.46
HOXC9P31274 OR51H2P-202ENST00000641424 3046 ntBASIC5.95□□□□□ -1.46
HOXC9P31274 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
HOXC9P31274 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.95□□□□□ -1.46
HOXC9P31274 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC5.95□□□□□ -1.46
HOXC9P31274 FTX-210ENST00000603037 8347 ntTSL 5 BASIC5.94□□□□□ -1.46
HOXC9P31274 AC005261.4-201ENST00000600047 1385 ntBASIC5.94□□□□□ -1.46
HOXC9P31274 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 122 ms