Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 SNORA11C-201ENST00000408532 129 ntBASIC5.45□□□□□ -1.54
COL5A3P25940 RN7SKP182-201ENST00000410772 298 ntBASIC5.45□□□□□ -1.54
COL5A3P25940 NMNAT1P2-201ENST00000435192 860 ntBASIC5.45□□□□□ -1.54
COL5A3P25940 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC5.45□□□□□ -1.54
COL5A3P25940 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC5.45□□□□□ -1.54
COL5A3P25940 AL031963.1-201ENST00000447644 695 ntTSL 3 BASIC5.45□□□□□ -1.54
COL5A3P25940 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC5.45□□□□□ -1.54
COL5A3P25940 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.45□□□□□ -1.54
COL5A3P25940 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC5.45□□□□□ -1.54
COL5A3P25940 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC5.45□□□□□ -1.54
COL5A3P25940 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC5.45□□□□□ -1.54
COL5A3P25940 AP003400.2-201ENST00000624036 666 ntBASIC5.45□□□□□ -1.54
COL5A3P25940 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
COL5A3P25940 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC5.45□□□□□ -1.54
COL5A3P25940 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.45□□□□□ -1.54
COL5A3P25940 AP000641.1-201ENST00000531988 1639 ntBASIC5.45□□□□□ -1.54
COL5A3P25940 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL5A3P25940 NXPH1-205ENST00000602349 1953 ntBASIC5.44□□□□□ -1.54
COL5A3P25940 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL5A3P25940 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL5A3P25940 DMD-205ENST00000359836 7339 ntTSL 5 BASIC5.44□□□□□ -1.54
COL5A3P25940 USP45-204ENST00000369233 2514 ntTSL 5 BASIC5.44□□□□□ -1.54
COL5A3P25940 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL5A3P25940 TTC41P-205ENST00000551270 3963 ntBASIC5.44□□□□□ -1.54
COL5A3P25940 CGA-201ENST00000369582 729 ntTSL 5 BASIC5.44□□□□□ -1.54
COL5A3P25940 MIR670-201ENST00000390142 98 ntBASIC5.44□□□□□ -1.54
COL5A3P25940 TCEA1P3-201ENST00000443005 880 ntBASIC5.44□□□□□ -1.54
COL5A3P25940 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC5.44□□□□□ -1.54
COL5A3P25940 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL5A3P25940 PARP4P3-201ENST00000510265 317 ntBASIC5.44□□□□□ -1.54
COL5A3P25940 AC120057.2-201ENST00000571520 271 ntBASIC5.44□□□□□ -1.54
COL5A3P25940 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC5.44□□□□□ -1.54
COL5A3P25940 AL161756.2-201ENST00000604597 246 ntBASIC5.44□□□□□ -1.54
COL5A3P25940 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC5.44□□□□□ -1.54
COL5A3P25940 AC011755.1-201ENST00000623763 2049 ntBASIC5.44□□□□□ -1.54
COL5A3P25940 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL5A3P25940 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL5A3P25940 UPF2-203ENST00000397053 5369 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
COL5A3P25940 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL5A3P25940 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC5.43□□□□□ -1.54
COL5A3P25940 GPATCH2-202ENST00000366935 5851 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
COL5A3P25940 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC5.43□□□□□ -1.54
COL5A3P25940 RNU11-4P-201ENST00000391149 133 ntBASIC5.43□□□□□ -1.54
COL5A3P25940 AC093578.1-201ENST00000415219 368 ntBASIC5.43□□□□□ -1.54
COL5A3P25940 RPL7P2-201ENST00000427639 268 ntBASIC5.43□□□□□ -1.54
COL5A3P25940 RPL23AP46-201ENST00000438548 490 ntBASIC5.43□□□□□ -1.54
COL5A3P25940 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC5.43□□□□□ -1.54
COL5A3P25940 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC5.43□□□□□ -1.54
COL5A3P25940 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC5.43□□□□□ -1.54
COL5A3P25940 RPL35AP15-201ENST00000468042 339 ntBASIC5.43□□□□□ -1.54
COL5A3P25940 AC128716.1-201ENST00000475129 166 ntBASIC5.43□□□□□ -1.54
COL5A3P25940 AC022336.1-201ENST00000475510 337 ntBASIC5.43□□□□□ -1.54
COL5A3P25940 SOX9-AS1-211ENST00000533179 460 ntTSL 3 BASIC5.43□□□□□ -1.54
COL5A3P25940 TVP23BP1-201ENST00000557500 617 ntBASIC5.43□□□□□ -1.54
COL5A3P25940 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
COL5A3P25940 AC011462.3-201ENST00000598988 540 ntTSL 3 BASIC5.43□□□□□ -1.54
COL5A3P25940 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC5.43□□□□□ -1.54
COL5A3P25940 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL5A3P25940 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC5.43□□□□□ -1.54
COL5A3P25940 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC5.43□□□□□ -1.54
COL5A3P25940 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL5A3P25940 EED-206ENST00000527888 1422 ntTSL 2 BASIC5.43□□□□□ -1.54
COL5A3P25940 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
COL5A3P25940 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL5A3P25940 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
COL5A3P25940 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
COL5A3P25940 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL5A3P25940 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL5A3P25940 SNORA63.1-201ENST00000362493 131 ntBASIC5.43□□□□□ -1.54
COL5A3P25940 RNU6-761P-201ENST00000384148 107 ntBASIC5.43□□□□□ -1.54
COL5A3P25940 RPL23AP83-201ENST00000434984 473 ntBASIC5.43□□□□□ -1.54
COL5A3P25940 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC5.43□□□□□ -1.54
COL5A3P25940 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC5.43□□□□□ -1.54
COL5A3P25940 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC5.43□□□□□ -1.54
COL5A3P25940 AC007991.1-201ENST00000522680 631 ntBASIC5.43□□□□□ -1.54
COL5A3P25940 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC5.43□□□□□ -1.54
COL5A3P25940 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC5.43□□□□□ -1.54
COL5A3P25940 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC5.43□□□□□ -1.54
COL5A3P25940 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC5.43□□□□□ -1.54
COL5A3P25940 AP001153.1-201ENST00000641024 338 ntBASIC5.43□□□□□ -1.54
COL5A3P25940 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
COL5A3P25940 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL5A3P25940 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC5.42□□□□□ -1.54
COL5A3P25940 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC5.42□□□□□ -1.54
COL5A3P25940 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC5.42□□□□□ -1.54
COL5A3P25940 ADNP-202ENST00000371602 6115 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL5A3P25940 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
COL5A3P25940 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC5.42□□□□□ -1.54
COL5A3P25940 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL5A3P25940 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
COL5A3P25940 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5.42□□□□□ -1.54
COL5A3P25940 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL5A3P25940 AP001157.1-201ENST00000550837 2339 ntBASIC5.42□□□□□ -1.54
COL5A3P25940 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC5.42□□□□□ -1.54
COL5A3P25940 RNA5SP513-201ENST00000364648 118 ntBASIC5.42□□□□□ -1.54
COL5A3P25940 SNORA62.3-201ENST00000365110 153 ntBASIC5.42□□□□□ -1.54
COL5A3P25940 MIR921-201ENST00000401133 56 ntBASIC5.42□□□□□ -1.54
COL5A3P25940 AL080315.1-201ENST00000406055 466 ntBASIC5.42□□□□□ -1.54
COL5A3P25940 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC5.42□□□□□ -1.54
COL5A3P25940 AC108032.1-201ENST00000416706 207 ntBASIC5.42□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 115.1 ms