Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AL009031.1-201ENST00000632346 1026 ntTSL 2 BASIC7.65□□□□□ -1.18
COL9A1P20849 AC233280.20-201ENST00000637412 416 ntBASIC7.65□□□□□ -1.18
COL9A1P20849 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC7.65□□□□□ -1.18
COL9A1P20849 HBS1L-205ENST00000367837 7163 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.19
COL9A1P20849 PTPN3-201ENST00000262539 6832 ntTSL 5 BASIC7.65□□□□□ -1.19
COL9A1P20849 ZNF611-204ENST00000543227 4517 ntAPPRIS P1 TSL 4 BASIC7.65□□□□□ -1.19
COL9A1P20849 BAAT-201ENST00000259407 3377 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.19
COL9A1P20849 ZNF781-201ENST00000358582 3147 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.19
COL9A1P20849 EIF4G3-201ENST00000264211 5802 ntAPPRIS P3 TSL 5 BASIC7.65□□□□□ -1.19
COL9A1P20849 CNGA2-201ENST00000329903 2834 ntAPPRIS P1 TSL 5 BASIC7.65□□□□□ -1.19
COL9A1P20849 BRS3-201ENST00000370648 2833 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.19
COL9A1P20849 ESRRG-221ENST00000493603 5304 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.19
COL9A1P20849 SORBS1-207ENST00000371239 2436 ntAPPRIS ALT2 TSL 5 BASIC7.64□□□□□ -1.19
COL9A1P20849 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
COL9A1P20849 GUCY1A3-202ENST00000393832 4286 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
COL9A1P20849 DAAM1-201ENST00000360909 4227 ntAPPRIS ALT2 TSL 1 (best) BASIC7.64□□□□□ -1.19
COL9A1P20849 ERICH3-202ENST00000420661 2068 ntAPPRIS ALT2 TSL 1 (best) BASIC7.64□□□□□ -1.19
COL9A1P20849 TMEM99-204ENST00000622451 2073 ntAPPRIS P2 TSL 2 BASIC7.64□□□□□ -1.19
COL9A1P20849 SIPA1L1-211ENST00000555818 7831 ntAPPRIS P3 TSL 1 (best) BASIC7.64□□□□□ -1.19
COL9A1P20849 ABCF2P1-201ENST00000465687 1867 ntBASIC7.64□□□□□ -1.19
COL9A1P20849 AL133467.3-203ENST00000461160 3574 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
COL9A1P20849 AC119744.1-201ENST00000454746 1715 ntBASIC7.64□□□□□ -1.19
COL9A1P20849 PLA2G7-202ENST00000537365 1747 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
COL9A1P20849 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
COL9A1P20849 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC7.64□□□□□ -1.19
COL9A1P20849 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
COL9A1P20849 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC7.64□□□□□ -1.19
COL9A1P20849 YES1-205ENST00000584307 4639 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
COL9A1P20849 ERC1-213ENST00000543086 9241 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
COL9A1P20849 GPX5-201ENST00000412168 1540 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
COL9A1P20849 OR2AH1P-202ENST00000641232 2744 ntBASIC7.64□□□□□ -1.19
COL9A1P20849 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
COL9A1P20849 RNU6-1252P-201ENST00000363054 104 ntBASIC7.64□□□□□ -1.19
COL9A1P20849 Y_RNA.378-201ENST00000365652 113 ntBASIC7.64□□□□□ -1.19
COL9A1P20849 Y_RNA.461-201ENST00000384263 103 ntBASIC7.64□□□□□ -1.19
COL9A1P20849 MIR99A-201ENST00000384906 81 ntBASIC7.64□□□□□ -1.19
COL9A1P20849 AL590762.1-201ENST00000391782 432 ntBASIC7.64□□□□□ -1.19
COL9A1P20849 SUMO2P13-201ENST00000403109 272 ntBASIC7.64□□□□□ -1.19
COL9A1P20849 AL391417.1-201ENST00000404100 426 ntBASIC7.64□□□□□ -1.19
COL9A1P20849 AL590290.1-201ENST00000405336 380 ntBASIC7.64□□□□□ -1.19
COL9A1P20849 SNORA2C-201ENST00000408564 137 ntBASIC7.64□□□□□ -1.19
COL9A1P20849 RN7SKP261-201ENST00000410948 278 ntBASIC7.64□□□□□ -1.19
COL9A1P20849 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC7.64□□□□□ -1.19
COL9A1P20849 AL606753.1-201ENST00000427435 87 ntBASIC7.64□□□□□ -1.19
COL9A1P20849 AC093156.1-201ENST00000440382 670 ntBASIC7.64□□□□□ -1.19
COL9A1P20849 DYNLT3P2-201ENST00000442517 295 ntBASIC7.64□□□□□ -1.19
COL9A1P20849 POU5F1P5-201ENST00000445059 658 ntBASIC7.64□□□□□ -1.19
COL9A1P20849 AC105399.1-202ENST00000447303 205 ntBASIC7.64□□□□□ -1.19
COL9A1P20849 OR1H1P-201ENST00000448731 937 ntBASIC7.64□□□□□ -1.19
COL9A1P20849 HMGB1P7-201ENST00000450921 612 ntBASIC7.64□□□□□ -1.19
COL9A1P20849 AC026410.2-201ENST00000460281 156 ntBASIC7.64□□□□□ -1.19
COL9A1P20849 FTH1P23-201ENST00000492727 550 ntBASIC7.64□□□□□ -1.19
COL9A1P20849 NACAP6-201ENST00000509572 622 ntBASIC7.64□□□□□ -1.19
COL9A1P20849 AC025465.3-201ENST00000510570 311 ntBASIC7.64□□□□□ -1.19
COL9A1P20849 PSD2-AS1-201ENST00000515306 412 ntTSL 3 BASIC7.64□□□□□ -1.19
COL9A1P20849 AC022868.1-201ENST00000517767 391 ntBASIC7.64□□□□□ -1.19
COL9A1P20849 AC087360.1-201ENST00000518788 616 ntBASIC7.64□□□□□ -1.19
COL9A1P20849 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC7.64□□□□□ -1.19
COL9A1P20849 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC7.64□□□□□ -1.19
COL9A1P20849 MTND4P7-201ENST00000523876 130 ntBASIC7.64□□□□□ -1.19
COL9A1P20849 KC877392.1-201ENST00000524855 426 ntTSL 3 BASIC7.64□□□□□ -1.19
COL9A1P20849 PPIAP6-201ENST00000557078 499 ntBASIC7.64□□□□□ -1.19
COL9A1P20849 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC7.64□□□□□ -1.19
COL9A1P20849 AC010323.2-201ENST00000596405 594 ntBASIC7.64□□□□□ -1.19
COL9A1P20849 AL022238.3-201ENST00000609279 443 ntBASIC7.64□□□□□ -1.19
COL9A1P20849 Z82243.1-201ENST00000609432 473 ntBASIC7.64□□□□□ -1.19
COL9A1P20849 AC010378.1-201ENST00000619270 362 ntBASIC7.64□□□□□ -1.19
COL9A1P20849 MPP6-209ENST00000625307 126 ntTSL 5 BASIC7.64□□□□□ -1.19
COL9A1P20849 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC7.64□□□□□ -1.19
COL9A1P20849 AL512643.1-201ENST00000635735 524 ntBASIC7.64□□□□□ -1.19
COL9A1P20849 POGK-201ENST00000367875 6254 ntAPPRIS P1 TSL 5 BASIC7.64□□□□□ -1.19
COL9A1P20849 EGFEM1P-205ENST00000483846 2327 ntTSL 5 BASIC7.64□□□□□ -1.19
COL9A1P20849 LINC02111-201ENST00000505158 2312 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
COL9A1P20849 XIRP2-202ENST00000409043 3292 ntAPPRIS P3 TSL 1 (best) BASIC7.64□□□□□ -1.19
COL9A1P20849 CECR2-206ENST00000612582 9645 ntAPPRIS ALT2 TSL 5 BASIC7.64□□□□□ -1.19
COL9A1P20849 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
COL9A1P20849 NASP-224ENST00000537798 3097 ntAPPRIS ALT2 TSL 2 BASIC7.64□□□□□ -1.19
COL9A1P20849 USP16-204ENST00000399976 2963 ntAPPRIS P3 TSL 1 (best) BASIC7.64□□□□□ -1.19
COL9A1P20849 DDX18P4-201ENST00000511690 1966 ntBASIC7.64□□□□□ -1.19
COL9A1P20849 GON4L-203ENST00000368331 7823 ntAPPRIS ALT2 TSL 1 (best) BASIC7.64□□□□□ -1.19
COL9A1P20849 GYG2-209ENST00000639373 2900 ntAPPRIS ALT2 TSL 1 (best) BASIC7.64□□□□□ -1.19
COL9A1P20849 ATF2-203ENST00000392544 1919 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
COL9A1P20849 ZNF19-210ENST00000567225 2838 ntTSL 3 BASIC7.64□□□□□ -1.19
COL9A1P20849 AC091173.1-201ENST00000505627 2750 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
COL9A1P20849 CFAP47-201ENST00000297866 3608 ntTSL 2 BASIC7.64□□□□□ -1.19
COL9A1P20849 GOLGA8B-202ENST00000438958 4252 ntAPPRIS ALT2 TSL 5 BASIC7.64□□□□□ -1.19
COL9A1P20849 DRP2-205ENST00000541709 6835 ntAPPRIS ALT1 TSL 2 BASIC7.64□□□□□ -1.19
COL9A1P20849 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC7.63□□□□□ -1.19
COL9A1P20849 PRICKLE2-AS3-201ENST00000473434 2496 ntTSL 2 BASIC7.63□□□□□ -1.19
COL9A1P20849 FKTN-202ENST00000357998 2404 ntTSL 5 BASIC7.63□□□□□ -1.19
COL9A1P20849 PARP4P1-201ENST00000435945 2337 ntBASIC7.63□□□□□ -1.19
COL9A1P20849 ERC1-203ENST00000360905 5789 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
COL9A1P20849 LINC01829-202ENST00000433133 2100 ntTSL 2 BASIC7.63□□□□□ -1.19
COL9A1P20849 LINC02150-201ENST00000513157 2120 ntTSL 5 BASIC7.63□□□□□ -1.19
COL9A1P20849 ZNF613-201ENST00000293471 3419 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
COL9A1P20849 SORBS1-211ENST00000371247 7354 ntAPPRIS ALT2 TSL 5 BASIC7.63□□□□□ -1.19
COL9A1P20849 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC7.63□□□□□ -1.19
COL9A1P20849 AL731566.1-201ENST00000620490 1937 ntBASIC7.63□□□□□ -1.19
COL9A1P20849 MBTPS2-201ENST00000365779 4457 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
COL9A1P20849 PVALB-201ENST00000216200 595 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms