Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
HOXD4P09016 RAB28P3-201ENST00000448325 597 ntBASIC4.5□□□□□ -1.69
HOXD4P09016 SLC25A18P1-201ENST00000449385 454 ntBASIC4.5□□□□□ -1.69
HOXD4P09016 NDUFA12P1-201ENST00000455914 406 ntBASIC4.5□□□□□ -1.69
HOXD4P09016 AC091180.1-201ENST00000462104 372 ntBASIC4.5□□□□□ -1.69
HOXD4P09016 AC107015.1-201ENST00000466902 747 ntBASIC4.5□□□□□ -1.69
HOXD4P09016 AC096741.1-201ENST00000472250 846 ntBASIC4.5□□□□□ -1.69
HOXD4P09016 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
HOXD4P09016 RN7SL459P-201ENST00000481078 302 ntBASIC4.5□□□□□ -1.69
HOXD4P09016 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXD4P09016 NIFKP7-201ENST00000503365 834 ntBASIC4.5□□□□□ -1.69
HOXD4P09016 AC010350.1-201ENST00000504908 231 ntBASIC4.5□□□□□ -1.69
HOXD4P09016 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC4.5□□□□□ -1.69
HOXD4P09016 IMPA1P1-201ENST00000510718 842 ntBASIC4.5□□□□□ -1.69
HOXD4P09016 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXD4P09016 OR5AN2P-201ENST00000534535 896 ntBASIC4.5□□□□□ -1.69
HOXD4P09016 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC4.5□□□□□ -1.69
HOXD4P09016 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXD4P09016 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC4.5□□□□□ -1.69
HOXD4P09016 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC4.5□□□□□ -1.69
HOXD4P09016 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC4.5□□□□□ -1.69
HOXD4P09016 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC4.5□□□□□ -1.69
HOXD4P09016 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC4.5□□□□□ -1.69
HOXD4P09016 MTND2P13-201ENST00000577438 1039 ntBASIC4.5□□□□□ -1.69
HOXD4P09016 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXD4P09016 AL121890.2-201ENST00000617644 465 ntBASIC4.5□□□□□ -1.69
HOXD4P09016 AC253576.2-201ENST00000618815 580 ntBASIC4.5□□□□□ -1.69
HOXD4P09016 AC074140.1-201ENST00000621617 208 ntBASIC4.5□□□□□ -1.69
HOXD4P09016 AC012414.7-202ENST00000622705 1090 ntBASIC4.5□□□□□ -1.69
HOXD4P09016 AP000648.2-201ENST00000624182 404 ntBASIC4.5□□□□□ -1.69
HOXD4P09016 CR381572.2-201ENST00000624852 397 ntBASIC4.5□□□□□ -1.69
HOXD4P09016 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC4.5□□□□□ -1.69
HOXD4P09016 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXD4P09016 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXD4P09016 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
HOXD4P09016 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXD4P09016 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXD4P09016 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC4.49□□□□□ -1.69
HOXD4P09016 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
HOXD4P09016 VN2R3P-201ENST00000422626 1412 ntBASIC4.49□□□□□ -1.69
HOXD4P09016 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
HOXD4P09016 AC079741.1-201ENST00000321498 212 ntBASIC4.49□□□□□ -1.69
HOXD4P09016 MIR365B-201ENST00000362317 111 ntBASIC4.49□□□□□ -1.69
HOXD4P09016 RNU6-618P-201ENST00000363518 112 ntBASIC4.49□□□□□ -1.69
HOXD4P09016 RNA5SP28-201ENST00000363841 119 ntBASIC4.49□□□□□ -1.69
HOXD4P09016 SNORA62-201ENST00000365493 153 ntBASIC4.49□□□□□ -1.69
HOXD4P09016 HMGB3P7-201ENST00000400214 611 ntBASIC4.49□□□□□ -1.69
HOXD4P09016 AC119751.6-201ENST00000416712 186 ntBASIC4.49□□□□□ -1.69
HOXD4P09016 AC019050.1-201ENST00000418508 492 ntBASIC4.49□□□□□ -1.69
HOXD4P09016 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC4.49□□□□□ -1.69
HOXD4P09016 C4BPAP2-201ENST00000428434 478 ntBASIC4.49□□□□□ -1.69
HOXD4P09016 DNAJC19P7-201ENST00000428811 344 ntBASIC4.49□□□□□ -1.69
HOXD4P09016 VDAC1P6-201ENST00000430062 855 ntBASIC4.49□□□□□ -1.69
HOXD4P09016 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC4.49□□□□□ -1.69
HOXD4P09016 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.49□□□□□ -1.69
HOXD4P09016 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC4.49□□□□□ -1.69
HOXD4P09016 AL691517.1-201ENST00000440833 1235 ntBASIC4.49□□□□□ -1.69
HOXD4P09016 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC4.49□□□□□ -1.69
HOXD4P09016 OR52J1P-201ENST00000450596 932 ntBASIC4.49□□□□□ -1.69
HOXD4P09016 IGHV5-78-201ENST00000450948 295 ntBASIC4.49□□□□□ -1.69
HOXD4P09016 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC4.49□□□□□ -1.69
HOXD4P09016 AC073358.1-201ENST00000505671 684 ntBASIC4.49□□□□□ -1.69
HOXD4P09016 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC4.49□□□□□ -1.69
HOXD4P09016 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC4.49□□□□□ -1.69
HOXD4P09016 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
HOXD4P09016 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC4.49□□□□□ -1.69
HOXD4P09016 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC4.49□□□□□ -1.69
HOXD4P09016 AL358913.1-201ENST00000554342 121 ntBASIC4.49□□□□□ -1.69
HOXD4P09016 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC4.49□□□□□ -1.69
HOXD4P09016 AL136520.1-202ENST00000555494 763 ntBASIC4.49□□□□□ -1.69
HOXD4P09016 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC4.49□□□□□ -1.69
HOXD4P09016 NDUFB4P11-201ENST00000560510 395 ntBASIC4.49□□□□□ -1.69
HOXD4P09016 AC122134.1-202ENST00000569111 1201 ntBASIC4.49□□□□□ -1.69
HOXD4P09016 MTND4LP25-201ENST00000570218 163 ntBASIC4.49□□□□□ -1.69
HOXD4P09016 AP005119.2-201ENST00000579735 1105 ntBASIC4.49□□□□□ -1.69
HOXD4P09016 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC4.49□□□□□ -1.69
HOXD4P09016 BNIP3P35-201ENST00000604530 490 ntBASIC4.49□□□□□ -1.69
HOXD4P09016 AL391358.1-201ENST00000605342 190 ntBASIC4.49□□□□□ -1.69
HOXD4P09016 AC073111.2-201ENST00000605657 1075 ntBASIC4.49□□□□□ -1.69
HOXD4P09016 AL590410.1-201ENST00000617925 333 ntBASIC4.49□□□□□ -1.69
HOXD4P09016 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC4.49□□□□□ -1.69
HOXD4P09016 AL356490.1-201ENST00000623079 479 ntBASIC4.49□□□□□ -1.69
HOXD4P09016 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
HOXD4P09016 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
HOXD4P09016 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC4.49□□□□□ -1.69
HOXD4P09016 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.49□□□□□ -1.69
HOXD4P09016 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
HOXD4P09016 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
HOXD4P09016 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC4.49□□□□□ -1.69
HOXD4P09016 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.49□□□□□ -1.69
HOXD4P09016 MFSD8-216ENST00000641147 4009 ntBASIC4.49□□□□□ -1.69
HOXD4P09016 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.49□□□□□ -1.69
HOXD4P09016 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC4.48□□□□□ -1.69
HOXD4P09016 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
HOXD4P09016 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
HOXD4P09016 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC4.48□□□□□ -1.69
HOXD4P09016 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.48□□□□□ -1.69
HOXD4P09016 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
HOXD4P09016 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
HOXD4P09016 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms