Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ushbp1Q8R370 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ushbp1Q8R370 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ushbp1Q8R370 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ushbp1Q8R370 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC18.68■□□□□ 0.58
Ushbp1Q8R370 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ushbp1Q8R370 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ushbp1Q8R370 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ushbp1Q8R370 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Ushbp1Q8R370 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC18.68■□□□□ 0.58
Ushbp1Q8R370 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC18.68■□□□□ 0.58
Ushbp1Q8R370 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ushbp1Q8R370 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ushbp1Q8R370 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ushbp1Q8R370 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ushbp1Q8R370 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ushbp1Q8R370 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ushbp1Q8R370 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ushbp1Q8R370 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC18.67■□□□□ 0.58
Ushbp1Q8R370 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Ushbp1Q8R370 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ushbp1Q8R370 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Ushbp1Q8R370 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC18.67■□□□□ 0.58
Ushbp1Q8R370 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ushbp1Q8R370 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ushbp1Q8R370 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ushbp1Q8R370 Gm17971-201ENSMUST00000190239 806 ntBASIC18.67■□□□□ 0.58
Ushbp1Q8R370 AC130713.1-201ENSMUST00000228853 1096 ntBASIC18.67■□□□□ 0.58
Ushbp1Q8R370 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Ushbp1Q8R370 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ushbp1Q8R370 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ushbp1Q8R370 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC18.67■□□□□ 0.58
Ushbp1Q8R370 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ushbp1Q8R370 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC18.67■□□□□ 0.58
Ushbp1Q8R370 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC18.66■□□□□ 0.58
Ushbp1Q8R370 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Ushbp1Q8R370 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ushbp1Q8R370 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ushbp1Q8R370 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ushbp1Q8R370 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ushbp1Q8R370 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Ushbp1Q8R370 Gm16061-201ENSMUST00000122167 857 ntBASIC18.66■□□□□ 0.58
Ushbp1Q8R370 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC18.66■□□□□ 0.58
Ushbp1Q8R370 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Ushbp1Q8R370 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC18.66■□□□□ 0.58
Ushbp1Q8R370 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ushbp1Q8R370 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ushbp1Q8R370 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Ushbp1Q8R370 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ushbp1Q8R370 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ushbp1Q8R370 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Ushbp1Q8R370 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ushbp1Q8R370 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ushbp1Q8R370 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ushbp1Q8R370 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Ushbp1Q8R370 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Ushbp1Q8R370 Gm26596-201ENSMUST00000180464 2655 ntBASIC18.65■□□□□ 0.58
Ushbp1Q8R370 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Ushbp1Q8R370 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ushbp1Q8R370 Gm18958-201ENSMUST00000174258 762 ntBASIC18.65■□□□□ 0.58
Ushbp1Q8R370 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ushbp1Q8R370 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ushbp1Q8R370 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Ushbp1Q8R370 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Ushbp1Q8R370 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Ushbp1Q8R370 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ushbp1Q8R370 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ushbp1Q8R370 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
Ushbp1Q8R370 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Ushbp1Q8R370 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
Ushbp1Q8R370 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ushbp1Q8R370 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ushbp1Q8R370 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ushbp1Q8R370 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ushbp1Q8R370 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
Ushbp1Q8R370 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Ushbp1Q8R370 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ushbp1Q8R370 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC18.64■□□□□ 0.57
Ushbp1Q8R370 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC18.64■□□□□ 0.57
Ushbp1Q8R370 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC18.64■□□□□ 0.57
Ushbp1Q8R370 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ushbp1Q8R370 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC18.64■□□□□ 0.57
Ushbp1Q8R370 Gm27704-201ENSMUST00000185094 107 ntBASIC18.64■□□□□ 0.57
Ushbp1Q8R370 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ushbp1Q8R370 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ushbp1Q8R370 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ushbp1Q8R370 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Ushbp1Q8R370 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ushbp1Q8R370 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Ushbp1Q8R370 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Ushbp1Q8R370 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ushbp1Q8R370 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ushbp1Q8R370 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ushbp1Q8R370 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ushbp1Q8R370 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ushbp1Q8R370 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Ushbp1Q8R370 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Ushbp1Q8R370 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Ushbp1Q8R370 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ushbp1Q8R370 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 42.2 ms