Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Trim56Q80VI1 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim56Q80VI1 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Trim56Q80VI1 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
Trim56Q80VI1 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim56Q80VI1 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim56Q80VI1 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim56Q80VI1 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC19.67■□□□□ 0.74
Trim56Q80VI1 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Trim56Q80VI1 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Trim56Q80VI1 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Trim56Q80VI1 Gm7284-201ENSMUST00000131667 944 ntBASIC19.67■□□□□ 0.74
Trim56Q80VI1 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC19.67■□□□□ 0.74
Trim56Q80VI1 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim56Q80VI1 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim56Q80VI1 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Trim56Q80VI1 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Trim56Q80VI1 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim56Q80VI1 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC19.67■□□□□ 0.74
Trim56Q80VI1 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim56Q80VI1 Gm26596-201ENSMUST00000180464 2655 ntBASIC19.67■□□□□ 0.74
Trim56Q80VI1 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim56Q80VI1 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Trim56Q80VI1 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC19.66■□□□□ 0.74
Trim56Q80VI1 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim56Q80VI1 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Trim56Q80VI1 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC19.66■□□□□ 0.74
Trim56Q80VI1 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
Trim56Q80VI1 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim56Q80VI1 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim56Q80VI1 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim56Q80VI1 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Trim56Q80VI1 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC19.66■□□□□ 0.74
Trim56Q80VI1 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim56Q80VI1 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim56Q80VI1 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Trim56Q80VI1 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim56Q80VI1 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Trim56Q80VI1 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
Trim56Q80VI1 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim56Q80VI1 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim56Q80VI1 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim56Q80VI1 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim56Q80VI1 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Trim56Q80VI1 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Trim56Q80VI1 Gm21362-201ENSMUST00000194272 928 ntBASIC19.65■□□□□ 0.74
Trim56Q80VI1 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Trim56Q80VI1 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim56Q80VI1 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim56Q80VI1 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim56Q80VI1 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim56Q80VI1 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim56Q80VI1 Gm8839-201ENSMUST00000121279 1645 ntBASIC19.65■□□□□ 0.74
Trim56Q80VI1 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim56Q80VI1 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC19.65■□□□□ 0.74
Trim56Q80VI1 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
Trim56Q80VI1 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim56Q80VI1 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Trim56Q80VI1 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC19.64■□□□□ 0.74
Trim56Q80VI1 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim56Q80VI1 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC19.64■□□□□ 0.73
Trim56Q80VI1 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Trim56Q80VI1 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC19.64■□□□□ 0.73
Trim56Q80VI1 Gm27704-201ENSMUST00000185094 107 ntBASIC19.64■□□□□ 0.73
Trim56Q80VI1 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC19.64■□□□□ 0.73
Trim56Q80VI1 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim56Q80VI1 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
Trim56Q80VI1 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim56Q80VI1 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim56Q80VI1 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Trim56Q80VI1 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim56Q80VI1 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim56Q80VI1 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim56Q80VI1 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim56Q80VI1 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim56Q80VI1 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Trim56Q80VI1 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim56Q80VI1 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim56Q80VI1 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Trim56Q80VI1 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Trim56Q80VI1 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim56Q80VI1 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim56Q80VI1 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim56Q80VI1 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim56Q80VI1 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Trim56Q80VI1 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim56Q80VI1 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim56Q80VI1 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim56Q80VI1 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim56Q80VI1 Gm7367-201ENSMUST00000057611 492 ntBASIC19.63■□□□□ 0.73
Trim56Q80VI1 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim56Q80VI1 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Trim56Q80VI1 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC19.63■□□□□ 0.73
Trim56Q80VI1 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
Trim56Q80VI1 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim56Q80VI1 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim56Q80VI1 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim56Q80VI1 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Trim56Q80VI1 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim56Q80VI1 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 36.8 ms