Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Cln3Q61124 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Cln3Q61124 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Cln3Q61124 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Cln3Q61124 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Cln3Q61124 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Cln3Q61124 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Cln3Q61124 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Cln3Q61124 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Cln3Q61124 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Cln3Q61124 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Cln3Q61124 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Cln3Q61124 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Cln3Q61124 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC18.24■□□□□ 0.51
Cln3Q61124 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Cln3Q61124 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC18.24■□□□□ 0.51
Cln3Q61124 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC18.24■□□□□ 0.51
Cln3Q61124 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC18.24■□□□□ 0.51
Cln3Q61124 AC127349.1-201ENSMUST00000224590 266 ntBASIC18.24■□□□□ 0.51
Cln3Q61124 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Cln3Q61124 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Cln3Q61124 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
Cln3Q61124 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Cln3Q61124 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Cln3Q61124 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Cln3Q61124 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Cln3Q61124 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Cln3Q61124 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Cln3Q61124 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Cln3Q61124 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Cln3Q61124 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Cln3Q61124 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Cln3Q61124 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Cln3Q61124 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Cln3Q61124 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Cln3Q61124 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC18.23■□□□□ 0.51
Cln3Q61124 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Cln3Q61124 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Cln3Q61124 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Cln3Q61124 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Cln3Q61124 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Cln3Q61124 Gm37935-201ENSMUST00000192012 982 ntBASIC18.23■□□□□ 0.51
Cln3Q61124 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC18.23■□□□□ 0.51
Cln3Q61124 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Cln3Q61124 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Cln3Q61124 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Cln3Q61124 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Cln3Q61124 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC18.22■□□□□ 0.51
Cln3Q61124 Gm13418-201ENSMUST00000119097 944 ntBASIC18.22■□□□□ 0.51
Cln3Q61124 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Cln3Q61124 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC18.22■□□□□ 0.51
Cln3Q61124 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC18.22■□□□□ 0.51
Cln3Q61124 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC18.22■□□□□ 0.51
Cln3Q61124 Rbfox2-207ENSMUST00000227533 1041 ntBASIC18.22■□□□□ 0.51
Cln3Q61124 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Cln3Q61124 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Cln3Q61124 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC18.22■□□□□ 0.51
Cln3Q61124 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Cln3Q61124 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Cln3Q61124 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Cln3Q61124 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC18.22■□□□□ 0.51
Cln3Q61124 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Cln3Q61124 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Cln3Q61124 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Cln3Q61124 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Cln3Q61124 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Cln3Q61124 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC18.21■□□□□ 0.51
Cln3Q61124 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Cln3Q61124 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Cln3Q61124 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Cln3Q61124 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Cln3Q61124 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Cln3Q61124 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Cln3Q61124 Gm5364-201ENSMUST00000216789 889 ntBASIC18.21■□□□□ 0.51
Cln3Q61124 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Cln3Q61124 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Cln3Q61124 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Cln3Q61124 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Cln3Q61124 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Cln3Q61124 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Cln3Q61124 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Cln3Q61124 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Cln3Q61124 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Cln3Q61124 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Cln3Q61124 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Cln3Q61124 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Cln3Q61124 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Cln3Q61124 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
Cln3Q61124 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
Cln3Q61124 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Cln3Q61124 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Cln3Q61124 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
Cln3Q61124 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Cln3Q61124 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Cln3Q61124 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC18.2■□□□□ 0.5
Cln3Q61124 Mir5126-201ENSMUST00000175513 77 ntBASIC18.2■□□□□ 0.5
Cln3Q61124 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC18.2■□□□□ 0.5
Cln3Q61124 AC114585.2-202ENSMUST00000228094 426 ntBASIC18.2■□□□□ 0.5
Cln3Q61124 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Cln3Q61124 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms