Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 ARAFP2-201ENST00000440565 559 ntBASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 AC090686.1-201ENST00000481577 749 ntBASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 FTH1P21-201ENST00000512179 511 ntBASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 MIR8059-201ENST00000620427 81 ntBASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 KMT2A-213ENST00000534358 16602 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 AC073136.1-201ENST00000449426 2884 ntBASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 GMPSP1-201ENST00000514075 579 ntBASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 RNA5SP49-201ENST00000516450 115 ntBASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 RNA5SP519-201ENST00000516480 119 ntBASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 TRMT10BP1-201ENST00000519377 943 ntBASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 CASC19-203ENST00000523510 575 ntTSL 3 BASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 AC106782.4-201ENST00000568264 210 ntBASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 CR392039.5-201ENST00000623201 510 ntBASIC5.74□□□□□ -1.49
SHANK3Q9BYB0 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SHANK3Q9BYB0 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SHANK3Q9BYB0 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SHANK3Q9BYB0 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC5.73□□□□□ -1.49
SHANK3Q9BYB0 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC5.73□□□□□ -1.49
SHANK3Q9BYB0 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC5.73□□□□□ -1.49
SHANK3Q9BYB0 CASC19-204ENST00000641001 2055 ntBASIC5.73□□□□□ -1.49
SHANK3Q9BYB0 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
SHANK3Q9BYB0 NF1-201ENST00000356175 12362 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
SHANK3Q9BYB0 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
SHANK3Q9BYB0 COX6B1P7-201ENST00000430845 235 ntBASIC5.73□□□□□ -1.49
SHANK3Q9BYB0 RNA5SP246-201ENST00000458909 119 ntBASIC5.73□□□□□ -1.49
SHANK3Q9BYB0 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC5.73□□□□□ -1.49
SHANK3Q9BYB0 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SHANK3Q9BYB0 MIR6875-201ENST00000617506 72 ntBASIC5.73□□□□□ -1.49
SHANK3Q9BYB0 TEX41-256ENST00000626411 368 ntTSL 5 BASIC5.73□□□□□ -1.49
SHANK3Q9BYB0 AC139769.1-204ENST00000472297 1931 ntBASIC5.73□□□□□ -1.49
SHANK3Q9BYB0 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.73□□□□□ -1.49
SHANK3Q9BYB0 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
SHANK3Q9BYB0 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
SHANK3Q9BYB0 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC5.73□□□□□ -1.49
SHANK3Q9BYB0 ARFGEF3-201ENST00000251691 14877 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SHANK3Q9BYB0 AL137141.1-201ENST00000624622 4836 ntBASIC5.72□□□□□ -1.49
SHANK3Q9BYB0 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SHANK3Q9BYB0 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
SHANK3Q9BYB0 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SHANK3Q9BYB0 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC5.72□□□□□ -1.49
SHANK3Q9BYB0 OGT-202ENST00000373719 5461 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
SHANK3Q9BYB0 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
SHANK3Q9BYB0 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
SHANK3Q9BYB0 RNU1-14P-201ENST00000362759 152 ntBASIC5.72□□□□□ -1.49
SHANK3Q9BYB0 RN7SKP167-201ENST00000411047 285 ntBASIC5.72□□□□□ -1.49
SHANK3Q9BYB0 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC5.72□□□□□ -1.49
SHANK3Q9BYB0 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC5.72□□□□□ -1.49
SHANK3Q9BYB0 EIF2S2P5-201ENST00000457635 968 ntBASIC5.72□□□□□ -1.49
SHANK3Q9BYB0 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC5.72□□□□□ -1.49
SHANK3Q9BYB0 AC097486.1-201ENST00000515331 210 ntBASIC5.72□□□□□ -1.49
SHANK3Q9BYB0 RN7SKP157-201ENST00000516174 282 ntBASIC5.72□□□□□ -1.49
SHANK3Q9BYB0 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC5.72□□□□□ -1.49
SHANK3Q9BYB0 RNU4-89P-201ENST00000607443 133 ntBASIC5.72□□□□□ -1.49
SHANK3Q9BYB0 RNA5SP439-201ENST00000617595 124 ntBASIC5.72□□□□□ -1.49
SHANK3Q9BYB0 FP325313.1-201ENST00000638228 703 ntBASIC5.72□□□□□ -1.49
SHANK3Q9BYB0 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC5.72□□□□□ -1.49
SHANK3Q9BYB0 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
SHANK3Q9BYB0 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
SHANK3Q9BYB0 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SHANK3Q9BYB0 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
SHANK3Q9BYB0 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
SHANK3Q9BYB0 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
SHANK3Q9BYB0 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.49
SHANK3Q9BYB0 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
SHANK3Q9BYB0 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
SHANK3Q9BYB0 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC5.71□□□□□ -1.49
SHANK3Q9BYB0 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
SHANK3Q9BYB0 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC5.71□□□□□ -1.49
SHANK3Q9BYB0 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC5.71□□□□□ -1.49
SHANK3Q9BYB0 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC5.71□□□□□ -1.49
SHANK3Q9BYB0 AC087477.6-201ENST00000559595 843 ntBASIC5.71□□□□□ -1.49
SHANK3Q9BYB0 AL161729.3-201ENST00000603533 673 ntBASIC5.71□□□□□ -1.49
SHANK3Q9BYB0 LINC01808-202ENST00000641680 1116 ntBASIC5.71□□□□□ -1.49
SHANK3Q9BYB0 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
SHANK3Q9BYB0 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms