Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RN7SKP157-201ENST00000516174 282 ntBASIC5.1□□□□□ -1.59
COL28A1Q2UY09 RN7SKP253-201ENST00000516424 309 ntBASIC5.1□□□□□ -1.59
COL28A1Q2UY09 AC010476.1-201ENST00000519111 851 ntBASIC5.1□□□□□ -1.59
COL28A1Q2UY09 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC5.1□□□□□ -1.59
COL28A1Q2UY09 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.1□□□□□ -1.59
COL28A1Q2UY09 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.1□□□□□ -1.59
COL28A1Q2UY09 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC5.1□□□□□ -1.59
COL28A1Q2UY09 AP002373.2-201ENST00000541631 1060 ntBASIC5.1□□□□□ -1.59
COL28A1Q2UY09 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL28A1Q2UY09 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
COL28A1Q2UY09 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC5.1□□□□□ -1.59
COL28A1Q2UY09 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC5.1□□□□□ -1.59
COL28A1Q2UY09 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
COL28A1Q2UY09 OR1AB1P-201ENST00000585564 761 ntBASIC5.1□□□□□ -1.59
COL28A1Q2UY09 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC5.1□□□□□ -1.59
COL28A1Q2UY09 BNIP3P40-201ENST00000596017 556 ntBASIC5.1□□□□□ -1.59
COL28A1Q2UY09 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC5.1□□□□□ -1.59
COL28A1Q2UY09 AC245100.7-201ENST00000609678 442 ntBASIC5.1□□□□□ -1.59
COL28A1Q2UY09 AC025574.2-201ENST00000615621 514 ntBASIC5.1□□□□□ -1.59
COL28A1Q2UY09 AL162574.1-201ENST00000615702 950 ntBASIC5.1□□□□□ -1.59
COL28A1Q2UY09 BNIP3P41-202ENST00000616656 861 ntBASIC5.1□□□□□ -1.59
COL28A1Q2UY09 AC011755.1-201ENST00000623763 2049 ntBASIC5.1□□□□□ -1.59
COL28A1Q2UY09 AC083865.1-201ENST00000636634 831 ntBASIC5.1□□□□□ -1.59
COL28A1Q2UY09 TMEM30CP-203ENST00000637814 1035 ntBASIC5.1□□□□□ -1.59
COL28A1Q2UY09 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL28A1Q2UY09 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL28A1Q2UY09 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL28A1Q2UY09 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC5.1□□□□□ -1.59
COL28A1Q2UY09 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL28A1Q2UY09 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.09□□□□□ -1.59
COL28A1Q2UY09 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC5.09□□□□□ -1.59
COL28A1Q2UY09 AC020633.1-201ENST00000468439 2247 ntBASIC5.09□□□□□ -1.59
COL28A1Q2UY09 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL28A1Q2UY09 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL28A1Q2UY09 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL28A1Q2UY09 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL28A1Q2UY09 NXF4-202ENST00000416098 1465 ntBASIC5.09□□□□□ -1.59
COL28A1Q2UY09 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL28A1Q2UY09 RBPJP2-201ENST00000618187 1444 ntBASIC5.09□□□□□ -1.59
COL28A1Q2UY09 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC5.09□□□□□ -1.59
COL28A1Q2UY09 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL28A1Q2UY09 AC079741.1-201ENST00000321498 212 ntBASIC5.09□□□□□ -1.59
COL28A1Q2UY09 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL28A1Q2UY09 SNORA16A-201ENST00000384342 137 ntBASIC5.09□□□□□ -1.59
COL28A1Q2UY09 AP002784.2-201ENST00000397300 549 ntBASIC5.09□□□□□ -1.59
COL28A1Q2UY09 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC5.09□□□□□ -1.59
COL28A1Q2UY09 AL355615.1-201ENST00000406187 641 ntBASIC5.09□□□□□ -1.59
COL28A1Q2UY09 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
COL28A1Q2UY09 GJA6P-201ENST00000415117 1042 ntBASIC5.09□□□□□ -1.59
COL28A1Q2UY09 LINC01347-201ENST00000417964 355 ntBASIC5.09□□□□□ -1.59
COL28A1Q2UY09 AC008173.1-201ENST00000418901 264 ntBASIC5.09□□□□□ -1.59
COL28A1Q2UY09 HSPD1P12-201ENST00000429127 1069 ntBASIC5.09□□□□□ -1.59
COL28A1Q2UY09 AC005189.1-201ENST00000431286 310 ntBASIC5.09□□□□□ -1.59
COL28A1Q2UY09 CYCSP11-201ENST00000436426 315 ntBASIC5.09□□□□□ -1.59
COL28A1Q2UY09 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC5.09□□□□□ -1.59
COL28A1Q2UY09 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.09□□□□□ -1.59
COL28A1Q2UY09 AC092685.1-201ENST00000447960 1243 ntBASIC5.09□□□□□ -1.59
COL28A1Q2UY09 AL596266.1-201ENST00000448132 400 ntBASIC5.09□□□□□ -1.59
COL28A1Q2UY09 SNORD125-201ENST00000459538 96 ntBASIC5.09□□□□□ -1.59
COL28A1Q2UY09 RPS17P5-201ENST00000498293 408 ntBASIC5.09□□□□□ -1.59
COL28A1Q2UY09 ENPP7P11-201ENST00000505915 627 ntBASIC5.09□□□□□ -1.59
COL28A1Q2UY09 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.09□□□□□ -1.59
COL28A1Q2UY09 MAL2-205ENST00000521048 575 ntTSL 4 BASIC5.09□□□□□ -1.59
COL28A1Q2UY09 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC5.09□□□□□ -1.59
COL28A1Q2UY09 AC104115.2-201ENST00000523026 687 ntBASIC5.09□□□□□ -1.59
COL28A1Q2UY09 AP003066.2-201ENST00000529375 555 ntBASIC5.09□□□□□ -1.59
COL28A1Q2UY09 NPM1P35-201ENST00000533043 868 ntBASIC5.09□□□□□ -1.59
COL28A1Q2UY09 AC024940.3-201ENST00000538551 316 ntBASIC5.09□□□□□ -1.59
COL28A1Q2UY09 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL28A1Q2UY09 AC122688.1-201ENST00000541494 223 ntBASIC5.09□□□□□ -1.59
COL28A1Q2UY09 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC5.09□□□□□ -1.59
COL28A1Q2UY09 AC009117.1-201ENST00000563948 554 ntBASIC5.09□□□□□ -1.59
COL28A1Q2UY09 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC5.09□□□□□ -1.59
COL28A1Q2UY09 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL28A1Q2UY09 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC5.09□□□□□ -1.59
COL28A1Q2UY09 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL28A1Q2UY09 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC5.09□□□□□ -1.59
COL28A1Q2UY09 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC5.09□□□□□ -1.59
COL28A1Q2UY09 AC018618.2-201ENST00000604770 446 ntBASIC5.09□□□□□ -1.59
COL28A1Q2UY09 MIR92B-201ENST00000607575 96 ntBASIC5.09□□□□□ -1.59
COL28A1Q2UY09 OR2BH1P-201ENST00000608850 864 ntBASIC5.09□□□□□ -1.59
COL28A1Q2UY09 VN1R9P-201ENST00000614184 867 ntBASIC5.09□□□□□ -1.59
COL28A1Q2UY09 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC5.09□□□□□ -1.59
COL28A1Q2UY09 DLEU1_1.1-201ENST00000618107 190 ntBASIC5.09□□□□□ -1.59
COL28A1Q2UY09 AC023510.2-201ENST00000622162 746 ntBASIC5.09□□□□□ -1.59
COL28A1Q2UY09 AC145207.9-201ENST00000623802 325 ntBASIC5.09□□□□□ -1.59
COL28A1Q2UY09 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC5.09□□□□□ -1.59
COL28A1Q2UY09 AC099654.6-201ENST00000636487 512 ntBASIC5.09□□□□□ -1.59
COL28A1Q2UY09 USP45-204ENST00000369233 2514 ntTSL 5 BASIC5.09□□□□□ -1.59
COL28A1Q2UY09 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL28A1Q2UY09 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
COL28A1Q2UY09 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.09□□□□□ -1.6
COL28A1Q2UY09 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.6
COL28A1Q2UY09 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC5.09□□□□□ -1.6
COL28A1Q2UY09 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC5.09□□□□□ -1.6
COL28A1Q2UY09 AC104260.2-201ENST00000623551 3497 ntBASIC5.09□□□□□ -1.6
COL28A1Q2UY09 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
COL28A1Q2UY09 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
COL28A1Q2UY09 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC5.08□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 86.9 ms