Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
CUX1P39880 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC7.32□□□□□ -1.24
CUX1P39880 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC7.32□□□□□ -1.24
CUX1P39880 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC7.32□□□□□ -1.24
CUX1P39880 CGA-201ENST00000369582 729 ntTSL 5 BASIC7.32□□□□□ -1.24
CUX1P39880 EI24P3-201ENST00000399046 1062 ntBASIC7.32□□□□□ -1.24
CUX1P39880 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC7.32□□□□□ -1.24
CUX1P39880 AL133547.1-201ENST00000448546 220 ntBASIC7.32□□□□□ -1.24
CUX1P39880 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC7.32□□□□□ -1.24
CUX1P39880 AC010374.1-201ENST00000503762 1237 ntBASIC7.32□□□□□ -1.24
CUX1P39880 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC7.32□□□□□ -1.24
CUX1P39880 AC109635.6-201ENST00000525487 1113 ntBASIC7.32□□□□□ -1.24
CUX1P39880 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
CUX1P39880 AC004777.1-201ENST00000624317 287 ntBASIC7.32□□□□□ -1.24
CUX1P39880 FP325313.1-201ENST00000638228 703 ntBASIC7.32□□□□□ -1.24
CUX1P39880 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC7.31□□□□□ -1.24
CUX1P39880 TCP11X1-202ENST00000622971 1372 ntBASIC7.31□□□□□ -1.24
CUX1P39880 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC7.31□□□□□ -1.24
CUX1P39880 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC7.31□□□□□ -1.24
CUX1P39880 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
CUX1P39880 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC7.31□□□□□ -1.24
CUX1P39880 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC7.31□□□□□ -1.24
CUX1P39880 5S_rRNA.1-201ENST00000364415 116 ntBASIC7.31□□□□□ -1.24
CUX1P39880 RPL6P29-201ENST00000414863 865 ntBASIC7.31□□□□□ -1.24
CUX1P39880 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC7.31□□□□□ -1.24
CUX1P39880 RPL37P1-201ENST00000432310 284 ntBASIC7.31□□□□□ -1.24
CUX1P39880 ARAFP2-201ENST00000440565 559 ntBASIC7.31□□□□□ -1.24
CUX1P39880 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC7.31□□□□□ -1.24
CUX1P39880 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC7.31□□□□□ -1.24
CUX1P39880 RNA5SP446-201ENST00000515955 82 ntBASIC7.31□□□□□ -1.24
CUX1P39880 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC7.31□□□□□ -1.24
CUX1P39880 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC7.31□□□□□ -1.24
CUX1P39880 AGGF1P6-201ENST00000569213 976 ntBASIC7.31□□□□□ -1.24
CUX1P39880 AC127024.5-201ENST00000580085 462 ntBASIC7.31□□□□□ -1.24
CUX1P39880 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC7.31□□□□□ -1.24
CUX1P39880 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
CUX1P39880 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC7.31□□□□□ -1.24
CUX1P39880 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC7.3□□□□□ -1.24
CUX1P39880 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
CUX1P39880 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC7.3□□□□□ -1.24
CUX1P39880 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
CUX1P39880 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC7.3□□□□□ -1.24
CUX1P39880 AL080315.1-201ENST00000406055 466 ntBASIC7.3□□□□□ -1.24
CUX1P39880 RN7SKP159-201ENST00000410657 292 ntBASIC7.3□□□□□ -1.24
CUX1P39880 GCA-203ENST00000429691 824 ntTSL 3 BASIC7.3□□□□□ -1.24
CUX1P39880 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC7.3□□□□□ -1.24
CUX1P39880 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC7.3□□□□□ -1.24
CUX1P39880 AC067931.1-201ENST00000624190 671 ntBASIC7.3□□□□□ -1.24
CUX1P39880 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC7.3□□□□□ -1.24
CUX1P39880 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC7.3□□□□□ -1.24
CUX1P39880 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC7.3□□□□□ -1.24
CUX1P39880 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC7.3□□□□□ -1.24
CUX1P39880 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC7.3□□□□□ -1.24
CUX1P39880 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC7.3□□□□□ -1.24
CUX1P39880 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
CUX1P39880 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC7.29□□□□□ -1.24
CUX1P39880 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC7.29□□□□□ -1.24
CUX1P39880 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC7.29□□□□□ -1.24
CUX1P39880 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
CUX1P39880 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC7.29□□□□□ -1.24
CUX1P39880 SLC2A3P1-201ENST00000519666 1451 ntBASIC7.29□□□□□ -1.24
CUX1P39880 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC7.29□□□□□ -1.24
CUX1P39880 RNA5SP387-201ENST00000364226 106 ntBASIC7.29□□□□□ -1.24
CUX1P39880 RNU11-4P-201ENST00000391149 133 ntBASIC7.29□□□□□ -1.24
CUX1P39880 ENSAP1-201ENST00000392855 326 ntBASIC7.29□□□□□ -1.24
CUX1P39880 FCF1P5-201ENST00000406490 482 ntBASIC7.29□□□□□ -1.24
CUX1P39880 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC7.29□□□□□ -1.24
CUX1P39880 AL157385.1-201ENST00000446973 268 ntBASIC7.29□□□□□ -1.24
CUX1P39880 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC7.29□□□□□ -1.24
CUX1P39880 RPL7L1P8-201ENST00000469911 741 ntBASIC7.29□□□□□ -1.24
CUX1P39880 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC7.29□□□□□ -1.24
CUX1P39880 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC7.29□□□□□ -1.24
CUX1P39880 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC7.29□□□□□ -1.24
CUX1P39880 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC7.29□□□□□ -1.24
CUX1P39880 TVP23BP1-201ENST00000557500 617 ntBASIC7.29□□□□□ -1.24
CUX1P39880 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC7.29□□□□□ -1.24
CUX1P39880 AC025175.1-201ENST00000606482 759 ntBASIC7.29□□□□□ -1.24
CUX1P39880 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC7.29□□□□□ -1.24
CUX1P39880 MIR6075-201ENST00000620782 95 ntBASIC7.29□□□□□ -1.24
CUX1P39880 AC106871.1-201ENST00000568324 3102 ntBASIC7.29□□□□□ -1.24
CUX1P39880 AC073136.1-201ENST00000449426 2884 ntBASIC7.29□□□□□ -1.24
CUX1P39880 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
CUX1P39880 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
CUX1P39880 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
CUX1P39880 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC7.29□□□□□ -1.24
CUX1P39880 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC7.29□□□□□ -1.24
CUX1P39880 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC7.28□□□□□ -1.24
CUX1P39880 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC7.28□□□□□ -1.24
CUX1P39880 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC7.28□□□□□ -1.24
CUX1P39880 RPS20P14-201ENST00000412545 360 ntBASIC7.28□□□□□ -1.24
CUX1P39880 AC009506.2-201ENST00000420635 840 ntBASIC7.28□□□□□ -1.24
CUX1P39880 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC7.28□□□□□ -1.24
CUX1P39880 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC7.28□□□□□ -1.24
CUX1P39880 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC7.28□□□□□ -1.24
CUX1P39880 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC7.28□□□□□ -1.24
CUX1P39880 RNA5SP73-201ENST00000516744 108 ntBASIC7.28□□□□□ -1.24
CUX1P39880 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC7.28□□□□□ -1.24
CUX1P39880 RERGL-203ENST00000538724 973 ntAPPRIS P1 TSL 2 BASIC7.28□□□□□ -1.24
CUX1P39880 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC7.28□□□□□ -1.24
CUX1P39880 AC005034.4-201ENST00000603612 899 ntBASIC7.28□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 94.4 ms