Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC4.9□□□□□ -1.63
MSH3P20585 AL356981.1-201ENST00000454879 684 ntBASIC4.9□□□□□ -1.63
MSH3P20585 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC4.9□□□□□ -1.63
MSH3P20585 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC4.9□□□□□ -1.63
MSH3P20585 MTCO1P31-201ENST00000506355 492 ntBASIC4.9□□□□□ -1.63
MSH3P20585 AC093770.1-201ENST00000511559 571 ntBASIC4.9□□□□□ -1.63
MSH3P20585 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
MSH3P20585 AC010374.2-201ENST00000512933 535 ntBASIC4.9□□□□□ -1.63
MSH3P20585 ENPP7P9-201ENST00000514456 627 ntBASIC4.9□□□□□ -1.63
MSH3P20585 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC4.9□□□□□ -1.63
MSH3P20585 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC4.9□□□□□ -1.63
MSH3P20585 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC4.9□□□□□ -1.63
MSH3P20585 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
MSH3P20585 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC4.9□□□□□ -1.63
MSH3P20585 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC4.9□□□□□ -1.63
MSH3P20585 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
MSH3P20585 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC4.9□□□□□ -1.63
MSH3P20585 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC4.9□□□□□ -1.63
MSH3P20585 AL390726.5-202ENST00000564800 256 ntBASIC4.9□□□□□ -1.63
MSH3P20585 AC233266.2-201ENST00000567067 528 ntBASIC4.9□□□□□ -1.63
MSH3P20585 AC090330.1-201ENST00000588646 764 ntBASIC4.9□□□□□ -1.63
MSH3P20585 AL021707.7-201ENST00000607991 416 ntBASIC4.9□□□□□ -1.63
MSH3P20585 SSX9-202ENST00000608568 580 ntTSL 4 BASIC4.9□□□□□ -1.63
MSH3P20585 AL391834.2-201ENST00000609982 546 ntBASIC4.9□□□□□ -1.63
MSH3P20585 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC4.9□□□□□ -1.63
MSH3P20585 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
MSH3P20585 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC4.9□□□□□ -1.63
MSH3P20585 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.63
MSH3P20585 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
MSH3P20585 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
MSH3P20585 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.63
MSH3P20585 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC4.9□□□□□ -1.63
MSH3P20585 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
MSH3P20585 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.9□□□□□ -1.63
MSH3P20585 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
MSH3P20585 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
MSH3P20585 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC4.9□□□□□ -1.63
MSH3P20585 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC4.9□□□□□ -1.63
MSH3P20585 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
MSH3P20585 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.9□□□□□ -1.63
MSH3P20585 MAPK10-263ENST00000641052 4307 ntBASIC4.9□□□□□ -1.63
MSH3P20585 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC4.9□□□□□ -1.63
MSH3P20585 AL356317.1-201ENST00000396110 1436 ntBASIC4.89□□□□□ -1.63
MSH3P20585 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
MSH3P20585 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
MSH3P20585 LINC01355-201ENST00000566551 5444 ntBASIC4.89□□□□□ -1.63
MSH3P20585 AC131971.1-201ENST00000332881 1482 ntBASIC4.89□□□□□ -1.63
MSH3P20585 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.89□□□□□ -1.63
MSH3P20585 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
MSH3P20585 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.89□□□□□ -1.63
MSH3P20585 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC4.89□□□□□ -1.63
MSH3P20585 AP000568.1-201ENST00000282964 442 ntBASIC4.89□□□□□ -1.63
MSH3P20585 RNU6-1251P-201ENST00000364502 107 ntBASIC4.89□□□□□ -1.63
MSH3P20585 MIR620-201ENST00000385232 95 ntBASIC4.89□□□□□ -1.63
MSH3P20585 AC013442.1-201ENST00000397347 228 ntBASIC4.89□□□□□ -1.63
MSH3P20585 RANP4-201ENST00000413361 655 ntBASIC4.89□□□□□ -1.63
MSH3P20585 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC4.89□□□□□ -1.63
MSH3P20585 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC4.89□□□□□ -1.63
MSH3P20585 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC4.89□□□□□ -1.63
MSH3P20585 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
MSH3P20585 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC4.89□□□□□ -1.63
MSH3P20585 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC4.89□□□□□ -1.63
MSH3P20585 AC073052.1-201ENST00000440417 714 ntBASIC4.89□□□□□ -1.63
MSH3P20585 AL157884.3-201ENST00000448273 1184 ntBASIC4.89□□□□□ -1.63
MSH3P20585 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC4.89□□□□□ -1.63
MSH3P20585 MTND2P6-201ENST00000455337 1030 ntBASIC4.89□□□□□ -1.63
MSH3P20585 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.89□□□□□ -1.63
MSH3P20585 RPL32P9-201ENST00000487963 407 ntBASIC4.89□□□□□ -1.63
MSH3P20585 AC110775.1-201ENST00000513721 462 ntBASIC4.89□□□□□ -1.63
MSH3P20585 RNA5SP303-201ENST00000516192 130 ntBASIC4.89□□□□□ -1.63
MSH3P20585 HMGB1P46-201ENST00000520062 610 ntBASIC4.89□□□□□ -1.63
MSH3P20585 MTND1P6-201ENST00000523621 946 ntBASIC4.89□□□□□ -1.63
MSH3P20585 AP000676.2-201ENST00000529711 301 ntBASIC4.89□□□□□ -1.63
MSH3P20585 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC4.89□□□□□ -1.63
MSH3P20585 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
MSH3P20585 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC4.89□□□□□ -1.63
MSH3P20585 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
MSH3P20585 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC4.89□□□□□ -1.63
MSH3P20585 AP001521.2-201ENST00000608772 546 ntBASIC4.89□□□□□ -1.63
MSH3P20585 AL645927.2-201ENST00000618350 349 ntBASIC4.89□□□□□ -1.63
MSH3P20585 AL133370.2-201ENST00000619934 439 ntBASIC4.89□□□□□ -1.63
MSH3P20585 AC006840.1-201ENST00000623069 542 ntBASIC4.89□□□□□ -1.63
MSH3P20585 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC4.89□□□□□ -1.63
MSH3P20585 AC112694.2-201ENST00000623697 768 ntBASIC4.89□□□□□ -1.63
MSH3P20585 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC4.89□□□□□ -1.63
MSH3P20585 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC4.89□□□□□ -1.63
MSH3P20585 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC4.89□□□□□ -1.63
MSH3P20585 AC099654.2-201ENST00000433031 1980 ntBASIC4.89□□□□□ -1.63
MSH3P20585 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
MSH3P20585 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC4.89□□□□□ -1.63
MSH3P20585 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.89□□□□□ -1.63
MSH3P20585 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
MSH3P20585 HSPA8P19-201ENST00000505359 1517 ntBASIC4.88□□□□□ -1.63
MSH3P20585 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
MSH3P20585 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.88□□□□□ -1.63
MSH3P20585 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
MSH3P20585 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC4.88□□□□□ -1.63
MSH3P20585 RNU6-792P-201ENST00000363490 107 ntBASIC4.88□□□□□ -1.63
MSH3P20585 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
MSH3P20585 RNU6-1320P-201ENST00000390838 107 ntBASIC4.88□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms