Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC6.27□□□□□ -1.41
COL6A1P12109 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC6.27□□□□□ -1.41
COL6A1P12109 HMGB3P6-201ENST00000444896 598 ntBASIC6.27□□□□□ -1.41
COL6A1P12109 RNF148-202ENST00000447240 839 ntTSL 2 BASIC6.27□□□□□ -1.41
COL6A1P12109 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC6.27□□□□□ -1.41
COL6A1P12109 RPL12P26-201ENST00000452430 487 ntBASIC6.27□□□□□ -1.41
COL6A1P12109 NPM1P13-201ENST00000452663 865 ntBASIC6.27□□□□□ -1.41
COL6A1P12109 RNU1-88P-201ENST00000459274 128 ntBASIC6.27□□□□□ -1.41
COL6A1P12109 AC108734.3-201ENST00000481241 1165 ntBASIC6.27□□□□□ -1.41
COL6A1P12109 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC6.27□□□□□ -1.41
COL6A1P12109 SUMO1P1-201ENST00000497904 306 ntBASIC6.27□□□□□ -1.41
COL6A1P12109 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC6.27□□□□□ -1.41
COL6A1P12109 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC6.27□□□□□ -1.41
COL6A1P12109 MTND1P5-201ENST00000517906 940 ntBASIC6.27□□□□□ -1.41
COL6A1P12109 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC6.27□□□□□ -1.41
COL6A1P12109 MTCO1P49-201ENST00000523429 802 ntBASIC6.27□□□□□ -1.41
COL6A1P12109 AC104417.1-201ENST00000523974 751 ntBASIC6.27□□□□□ -1.41
COL6A1P12109 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC6.27□□□□□ -1.41
COL6A1P12109 OR8I1P-201ENST00000529291 931 ntBASIC6.27□□□□□ -1.41
COL6A1P12109 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC6.27□□□□□ -1.41
COL6A1P12109 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL6A1P12109 AC023813.2-201ENST00000564321 469 ntBASIC6.27□□□□□ -1.41
COL6A1P12109 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC6.27□□□□□ -1.41
COL6A1P12109 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC6.27□□□□□ -1.41
COL6A1P12109 AC107304.1-201ENST00000604229 296 ntBASIC6.27□□□□□ -1.41
COL6A1P12109 AL352984.2-202ENST00000613699 155 ntBASIC6.27□□□□□ -1.41
COL6A1P12109 AC090607.5-201ENST00000615692 224 ntBASIC6.27□□□□□ -1.41
COL6A1P12109 AL158163.2-201ENST00000619110 700 ntBASIC6.27□□□□□ -1.41
COL6A1P12109 AP001005.3-201ENST00000622049 129 ntBASIC6.27□□□□□ -1.41
COL6A1P12109 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC6.27□□□□□ -1.41
COL6A1P12109 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC6.27□□□□□ -1.41
COL6A1P12109 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC6.27□□□□□ -1.41
COL6A1P12109 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC6.27□□□□□ -1.41
COL6A1P12109 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL6A1P12109 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
COL6A1P12109 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL6A1P12109 AC012618.3-205ENST00000637896 1496 ntBASIC6.27□□□□□ -1.41
COL6A1P12109 BX005019.1-201ENST00000561881 1810 ntBASIC6.27□□□□□ -1.41
COL6A1P12109 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
COL6A1P12109 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC6.26□□□□□ -1.41
COL6A1P12109 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL6A1P12109 AL133268.1-201ENST00000405676 1401 ntBASIC6.26□□□□□ -1.41
COL6A1P12109 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL6A1P12109 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL6A1P12109 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL6A1P12109 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
COL6A1P12109 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC6.26□□□□□ -1.41
COL6A1P12109 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC6.26□□□□□ -1.41
COL6A1P12109 AC011493.1-201ENST00000596753 1632 ntBASIC6.26□□□□□ -1.41
COL6A1P12109 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC6.26□□□□□ -1.41
COL6A1P12109 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL6A1P12109 ANKRD36P1-201ENST00000344424 659 ntBASIC6.26□□□□□ -1.41
COL6A1P12109 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL6A1P12109 Y_RNA.77-201ENST00000362962 107 ntBASIC6.26□□□□□ -1.41
COL6A1P12109 AL451142.1-201ENST00000375867 775 ntBASIC6.26□□□□□ -1.41
COL6A1P12109 U6.112-201ENST00000384129 70 ntBASIC6.26□□□□□ -1.41
COL6A1P12109 Y_RNA.472-201ENST00000384322 102 ntBASIC6.26□□□□□ -1.41
COL6A1P12109 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL6A1P12109 ATF1P1-201ENST00000406040 927 ntBASIC6.26□□□□□ -1.41
COL6A1P12109 RNU2-17P-201ENST00000410290 190 ntBASIC6.26□□□□□ -1.41
COL6A1P12109 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC6.26□□□□□ -1.41
COL6A1P12109 TEX41-202ENST00000414256 604 ntTSL 5 BASIC6.26□□□□□ -1.41
COL6A1P12109 ELOCP9-201ENST00000418624 239 ntBASIC6.26□□□□□ -1.41
COL6A1P12109 AC015977.1-201ENST00000418887 292 ntBASIC6.26□□□□□ -1.41
COL6A1P12109 PTP4A1P5-201ENST00000420305 455 ntBASIC6.26□□□□□ -1.41
COL6A1P12109 AC234781.2-201ENST00000426370 994 ntBASIC6.26□□□□□ -1.41
COL6A1P12109 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL6A1P12109 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC6.26□□□□□ -1.41
COL6A1P12109 AC098826.1-201ENST00000433943 471 ntBASIC6.26□□□□□ -1.41
COL6A1P12109 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC6.26□□□□□ -1.41
COL6A1P12109 PTGES3P1-201ENST00000439531 483 ntBASIC6.26□□□□□ -1.41
COL6A1P12109 FHP1-201ENST00000442741 703 ntBASIC6.26□□□□□ -1.41
COL6A1P12109 AL096803.2-201ENST00000450032 677 ntBASIC6.26□□□□□ -1.41
COL6A1P12109 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC6.26□□□□□ -1.41
COL6A1P12109 AL354710.1-201ENST00000453641 246 ntBASIC6.26□□□□□ -1.41
COL6A1P12109 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC6.26□□□□□ -1.41
COL6A1P12109 MTND3P7-201ENST00000474435 343 ntBASIC6.26□□□□□ -1.41
COL6A1P12109 AL035690.1-201ENST00000490892 383 ntBASIC6.26□□□□□ -1.41
COL6A1P12109 RN7SL346P-201ENST00000491561 294 ntBASIC6.26□□□□□ -1.41
COL6A1P12109 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC6.26□□□□□ -1.41
COL6A1P12109 AC008837.1-201ENST00000511513 412 ntBASIC6.26□□□□□ -1.41
COL6A1P12109 MTND3P5-201ENST00000512798 333 ntBASIC6.26□□□□□ -1.41
COL6A1P12109 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC6.26□□□□□ -1.41
COL6A1P12109 MIR2117-201ENST00000516780 80 ntBASIC6.26□□□□□ -1.41
COL6A1P12109 snoU109.6-201ENST00000516831 118 ntBASIC6.26□□□□□ -1.41
COL6A1P12109 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC6.26□□□□□ -1.41
COL6A1P12109 AP004607.2-201ENST00000533949 322 ntBASIC6.26□□□□□ -1.41
COL6A1P12109 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC6.26□□□□□ -1.41
COL6A1P12109 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC6.26□□□□□ -1.41
COL6A1P12109 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL6A1P12109 MIR4789-201ENST00000577469 82 ntBASIC6.26□□□□□ -1.41
COL6A1P12109 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC6.26□□□□□ -1.41
COL6A1P12109 AC239868.4-201ENST00000608318 671 ntBASIC6.26□□□□□ -1.41
COL6A1P12109 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC6.26□□□□□ -1.41
COL6A1P12109 AC104073.3-201ENST00000610942 955 ntBASIC6.26□□□□□ -1.41
COL6A1P12109 MIR378J-201ENST00000611988 109 ntBASIC6.26□□□□□ -1.41
COL6A1P12109 AL138478.1-201ENST00000612252 832 ntBASIC6.26□□□□□ -1.41
COL6A1P12109 AC010435.1-201ENST00000623353 1177 ntBASIC6.26□□□□□ -1.41
COL6A1P12109 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC6.26□□□□□ -1.41
COL6A1P12109 AC139713.2-210ENST00000641741 992 ntBASIC6.26□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms