Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.75□□□□□ -1.49
SSX2IPQ9Y2D8 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.75□□□□□ -1.49
SSX2IPQ9Y2D8 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.75□□□□□ -1.49
SSX2IPQ9Y2D8 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SSX2IPQ9Y2D8 MFSD8-213ENST00000641134 1327 ntBASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 RNA5SP326-201ENST00000363209 110 ntBASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 RNU1-106P-201ENST00000384382 164 ntBASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 RNU6-31P-201ENST00000384388 108 ntBASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 MIR585-201ENST00000384887 94 ntBASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 CHMP1B2P-201ENST00000399581 597 ntBASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 RPL37P18-201ENST00000411602 243 ntBASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 AC211486.3-201ENST00000412694 621 ntBASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 TRIM60P5Y-201ENST00000413946 574 ntBASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 RBMY2KP-201ENST00000418221 992 ntBASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 RPS26P13-201ENST00000419030 330 ntBASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 OSTCP5-201ENST00000425293 453 ntBASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 RPL7P56-201ENST00000429441 717 ntBASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 AL353898.1-201ENST00000444055 238 ntBASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 AC093166.2-201ENST00000455969 1017 ntBASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 AC109464.1-201ENST00000511091 819 ntBASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 AC013701.1-201ENST00000522657 465 ntBASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 SETP1-201ENST00000556014 845 ntBASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 BNIP3P24-201ENST00000593398 557 ntBASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 AP002884.5-201ENST00000595053 1132 ntBASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 AC008751.2-201ENST00000597885 980 ntBASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 AC113368.1-201ENST00000603736 382 ntBASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 Z82195.1-201ENST00000604558 398 ntBASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 AC133644.2-201ENST00000608142 540 ntBASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 RMST_10.1-201ENST00000616309 154 ntBASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 AL035461.2-201ENST00000619201 524 ntBASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 AC006386.1-201ENST00000619436 415 ntBASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 AC099494.2-201ENST00000623371 978 ntBASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 AC017104.5-201ENST00000637647 639 ntBASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 AC023421.1-201ENST00000590535 1785 ntBASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SSX2IPQ9Y2D8 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.73□□□□□ -1.49
SSX2IPQ9Y2D8 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.73□□□□□ -1.49
SSX2IPQ9Y2D8 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SSX2IPQ9Y2D8 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SSX2IPQ9Y2D8 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
SSX2IPQ9Y2D8 PCAT14-202ENST00000627127 3935 ntBASIC5.73□□□□□ -1.49
SSX2IPQ9Y2D8 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SSX2IPQ9Y2D8 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
SSX2IPQ9Y2D8 SNORD56.4-201ENST00000363883 71 ntBASIC5.73□□□□□ -1.49
SSX2IPQ9Y2D8 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SSX2IPQ9Y2D8 OR13C3-201ENST00000374781 1108 ntBASIC5.73□□□□□ -1.49
SSX2IPQ9Y2D8 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC5.73□□□□□ -1.49
SSX2IPQ9Y2D8 SNORA16A-201ENST00000384342 137 ntBASIC5.73□□□□□ -1.49
SSX2IPQ9Y2D8 GAPDHP15-201ENST00000398586 975 ntBASIC5.73□□□□□ -1.49
SSX2IPQ9Y2D8 AC107081.1-201ENST00000414975 361 ntBASIC5.73□□□□□ -1.49
SSX2IPQ9Y2D8 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC5.73□□□□□ -1.49
SSX2IPQ9Y2D8 EIF4A1P1-201ENST00000420241 934 ntBASIC5.73□□□□□ -1.49
SSX2IPQ9Y2D8 AC092648.1-201ENST00000425870 423 ntBASIC5.73□□□□□ -1.49
SSX2IPQ9Y2D8 AL590762.4-201ENST00000425885 253 ntBASIC5.73□□□□□ -1.49
SSX2IPQ9Y2D8 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC5.73□□□□□ -1.49
SSX2IPQ9Y2D8 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC5.73□□□□□ -1.49
SSX2IPQ9Y2D8 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC5.73□□□□□ -1.49
SSX2IPQ9Y2D8 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC5.73□□□□□ -1.49
SSX2IPQ9Y2D8 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC5.73□□□□□ -1.49
SSX2IPQ9Y2D8 EIF4EBP2P1-201ENST00000450009 343 ntBASIC5.73□□□□□ -1.49
SSX2IPQ9Y2D8 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.73□□□□□ -1.49
SSX2IPQ9Y2D8 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC5.73□□□□□ -1.49
SSX2IPQ9Y2D8 Z92846.1-201ENST00000456203 268 ntBASIC5.73□□□□□ -1.49
SSX2IPQ9Y2D8 MTND4LP2-201ENST00000502312 285 ntBASIC5.73□□□□□ -1.49
SSX2IPQ9Y2D8 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC5.73□□□□□ -1.49
SSX2IPQ9Y2D8 RFPL4AP5-201ENST00000514977 504 ntBASIC5.73□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 120 ms