Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 PDCD6IPP2-207ENST00000566321 1069 ntBASIC5.7□□□□□ -1.5
TDP1Q9NUW8 AC015726.1-201ENST00000602353 681 ntBASIC5.7□□□□□ -1.5
TDP1Q9NUW8 AC245008.1-201ENST00000608123 476 ntBASIC5.7□□□□□ -1.5
TDP1Q9NUW8 WWOX-217ENST00000620008 450 ntTSL 2 BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 AC074101.1-201ENST00000637861 241 ntBASIC5.7□□□□□ -1.5
TDP1Q9NUW8 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 NSRP1P1-201ENST00000444067 1693 ntBASIC5.69□□□□□ -1.5
TDP1Q9NUW8 AC120338.1-201ENST00000625074 1541 ntBASIC5.69□□□□□ -1.5
TDP1Q9NUW8 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 AC144833.1-201ENST00000567953 4089 ntBASIC5.69□□□□□ -1.5
TDP1Q9NUW8 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 NACA3P-201ENST00000359690 648 ntBASIC5.69□□□□□ -1.5
TDP1Q9NUW8 RNA5SP326-201ENST00000363209 110 ntBASIC5.69□□□□□ -1.5
TDP1Q9NUW8 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 SNORA16A-201ENST00000384342 137 ntBASIC5.69□□□□□ -1.5
TDP1Q9NUW8 SNORA67-201ENST00000384423 137 ntBASIC5.69□□□□□ -1.5
TDP1Q9NUW8 AC092745.2-202ENST00000411880 369 ntBASIC5.69□□□□□ -1.5
TDP1Q9NUW8 RAP1BP1-201ENST00000412709 553 ntBASIC5.69□□□□□ -1.5
TDP1Q9NUW8 MTND4P22-201ENST00000413116 1169 ntBASIC5.69□□□□□ -1.5
TDP1Q9NUW8 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 SRSF1P1-201ENST00000424058 520 ntBASIC5.69□□□□□ -1.5
TDP1Q9NUW8 AC108075.1-201ENST00000424692 529 ntBASIC5.69□□□□□ -1.5
TDP1Q9NUW8 COX7BP2-201ENST00000437976 242 ntBASIC5.69□□□□□ -1.5
TDP1Q9NUW8 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 AL929288.2-201ENST00000446368 407 ntBASIC5.69□□□□□ -1.5
TDP1Q9NUW8 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 AC234781.3-201ENST00000452540 973 ntBASIC5.69□□□□□ -1.5
TDP1Q9NUW8 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 AC104687.1-201ENST00000485829 412 ntBASIC5.69□□□□□ -1.5
TDP1Q9NUW8 AC004453.1-201ENST00000487895 408 ntBASIC5.69□□□□□ -1.5
TDP1Q9NUW8 NDUFA5P12-201ENST00000503796 343 ntBASIC5.69□□□□□ -1.5
TDP1Q9NUW8 HMGB1P44-201ENST00000508597 572 ntBASIC5.69□□□□□ -1.5
TDP1Q9NUW8 FGB-207ENST00000509493 1164 ntTSL 5 BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 RNU6-1129P-201ENST00000515964 104 ntBASIC5.69□□□□□ -1.5
TDP1Q9NUW8 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 AC022832.1-201ENST00000530718 645 ntBASIC5.69□□□□□ -1.5
TDP1Q9NUW8 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 YWHABP2-201ENST00000540201 713 ntBASIC5.69□□□□□ -1.5
TDP1Q9NUW8 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 MIR5708-201ENST00000579723 85 ntBASIC5.69□□□□□ -1.5
TDP1Q9NUW8 DPRXP5-201ENST00000604662 539 ntBASIC5.69□□□□□ -1.5
TDP1Q9NUW8 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 AC067852.7-201ENST00000623270 535 ntBASIC5.69□□□□□ -1.5
TDP1Q9NUW8 AP002505.2-201ENST00000623585 696 ntBASIC5.69□□□□□ -1.5
TDP1Q9NUW8 AC139792.2-201ENST00000624218 587 ntBASIC5.69□□□□□ -1.5
TDP1Q9NUW8 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 UBA3-213ENST00000631029 123 ntTSL 5 BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 AC011933.2-201ENST00000578539 2790 ntBASIC5.69□□□□□ -1.5
TDP1Q9NUW8 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 AC006042.3-201ENST00000454684 1469 ntBASIC5.69□□□□□ -1.5
TDP1Q9NUW8 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 DDX18P5-201ENST00000534547 1306 ntBASIC5.69□□□□□ -1.5
TDP1Q9NUW8 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
TDP1Q9NUW8 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms