Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 LINC00622-201ENST00000562811 1570 ntBASIC4.83□□□□□ -1.64
CCDC42Q96M95 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC42Q96M95 AL133243.3-201ENST00000617415 3004 ntBASIC4.83□□□□□ -1.64
CCDC42Q96M95 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC4.83□□□□□ -1.64
CCDC42Q96M95 ATG4AP1-201ENST00000416893 538 ntBASIC4.83□□□□□ -1.64
CCDC42Q96M95 BX510359.2-201ENST00000417920 305 ntBASIC4.83□□□□□ -1.64
CCDC42Q96M95 AC004074.1-201ENST00000421810 1063 ntBASIC4.83□□□□□ -1.64
CCDC42Q96M95 AC005154.2-201ENST00000438110 379 ntBASIC4.83□□□□□ -1.64
CCDC42Q96M95 AC011753.3-201ENST00000443436 406 ntBASIC4.83□□□□□ -1.64
CCDC42Q96M95 GEMIN8P3-201ENST00000445417 720 ntBASIC4.83□□□□□ -1.64
CCDC42Q96M95 SUMO2P1-206ENST00000445436 284 ntBASIC4.83□□□□□ -1.64
CCDC42Q96M95 AC012671.1-201ENST00000451912 203 ntBASIC4.83□□□□□ -1.64
CCDC42Q96M95 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC4.83□□□□□ -1.64
CCDC42Q96M95 RPS26P39-201ENST00000469206 341 ntBASIC4.83□□□□□ -1.64
CCDC42Q96M95 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC42Q96M95 AC147055.3-201ENST00000510547 851 ntBASIC4.83□□□□□ -1.64
CCDC42Q96M95 OR5AZ1P-201ENST00000527448 943 ntBASIC4.83□□□□□ -1.64
CCDC42Q96M95 AC005000.1-201ENST00000536192 288 ntBASIC4.83□□□□□ -1.64
CCDC42Q96M95 EDDM3DP-201ENST00000554692 434 ntBASIC4.83□□□□□ -1.64
CCDC42Q96M95 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC4.83□□□□□ -1.64
CCDC42Q96M95 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC4.83□□□□□ -1.64
CCDC42Q96M95 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC4.83□□□□□ -1.64
CCDC42Q96M95 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.83□□□□□ -1.64
CCDC42Q96M95 AL512782.1-201ENST00000603093 364 ntBASIC4.83□□□□□ -1.64
CCDC42Q96M95 AC007546.2-201ENST00000623996 360 ntBASIC4.83□□□□□ -1.64
CCDC42Q96M95 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.83□□□□□ -1.64
CCDC42Q96M95 ALB-214ENST00000509063 1911 ntTSL 5 BASIC4.83□□□□□ -1.64
CCDC42Q96M95 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC42Q96M95 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC42Q96M95 CPHL1P-201ENST00000461341 3407 ntBASIC4.82□□□□□ -1.64
CCDC42Q96M95 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC42Q96M95 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC42Q96M95 AC092111.2-201ENST00000611627 1414 ntBASIC4.82□□□□□ -1.64
CCDC42Q96M95 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC42Q96M95 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC42Q96M95 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
CCDC42Q96M95 RNA5SP507-201ENST00000363603 121 ntBASIC4.82□□□□□ -1.64
CCDC42Q96M95 SDHCP2-201ENST00000398565 501 ntBASIC4.82□□□□□ -1.64
CCDC42Q96M95 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.82□□□□□ -1.64
CCDC42Q96M95 COX6B1P1-201ENST00000415962 213 ntBASIC4.82□□□□□ -1.64
CCDC42Q96M95 RPS12P10-201ENST00000427031 377 ntBASIC4.82□□□□□ -1.64
CCDC42Q96M95 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC42Q96M95 MTND6P18-201ENST00000439477 513 ntBASIC4.82□□□□□ -1.64
CCDC42Q96M95 AC063943.1-201ENST00000465434 453 ntBASIC4.82□□□□□ -1.64
CCDC42Q96M95 RPL7P16-201ENST00000479738 738 ntBASIC4.82□□□□□ -1.64
CCDC42Q96M95 IGLV2-34-201ENST00000490007 283 ntBASIC4.82□□□□□ -1.64
CCDC42Q96M95 AC093763.2-201ENST00000505334 1223 ntBASIC4.82□□□□□ -1.64
CCDC42Q96M95 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC4.82□□□□□ -1.64
CCDC42Q96M95 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC42Q96M95 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.82□□□□□ -1.64
CCDC42Q96M95 AC008126.1-201ENST00000549019 480 ntBASIC4.82□□□□□ -1.64
CCDC42Q96M95 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.82□□□□□ -1.64
CCDC42Q96M95 AC009117.1-201ENST00000563948 554 ntBASIC4.82□□□□□ -1.64
CCDC42Q96M95 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC42Q96M95 MIR3667-201ENST00000581025 74 ntBASIC4.82□□□□□ -1.64
CCDC42Q96M95 MIR4310-201ENST00000582950 57 ntBASIC4.82□□□□□ -1.64
CCDC42Q96M95 AL160290.3-201ENST00000604869 165 ntBASIC4.82□□□□□ -1.64
CCDC42Q96M95 MIR6826-201ENST00000617808 98 ntBASIC4.82□□□□□ -1.64
CCDC42Q96M95 MIR6853-201ENST00000619642 74 ntBASIC4.82□□□□□ -1.64
CCDC42Q96M95 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC4.82□□□□□ -1.64
CCDC42Q96M95 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
CCDC42Q96M95 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC42Q96M95 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.82□□□□□ -1.64
CCDC42Q96M95 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.82□□□□□ -1.64
CCDC42Q96M95 AC093775.1-201ENST00000624154 1868 ntBASIC4.81□□□□□ -1.64
CCDC42Q96M95 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC42Q96M95 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC42Q96M95 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.81□□□□□ -1.64
CCDC42Q96M95 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC42Q96M95 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC42Q96M95 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
CCDC42Q96M95 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC42Q96M95 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.81□□□□□ -1.64
CCDC42Q96M95 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC42Q96M95 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC42Q96M95 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC42Q96M95 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC42Q96M95 AC021146.4-201ENST00000309229 279 ntBASIC4.81□□□□□ -1.64
CCDC42Q96M95 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
CCDC42Q96M95 MIR137-201ENST00000385223 102 ntBASIC4.81□□□□□ -1.64
CCDC42Q96M95 OR1F12-201ENST00000402365 945 ntBASIC4.81□□□□□ -1.64
CCDC42Q96M95 RN7SKP100-201ENST00000411258 284 ntBASIC4.81□□□□□ -1.64
CCDC42Q96M95 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC42Q96M95 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC4.81□□□□□ -1.64
CCDC42Q96M95 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC4.81□□□□□ -1.64
CCDC42Q96M95 OR2X1P-201ENST00000421144 687 ntBASIC4.81□□□□□ -1.64
CCDC42Q96M95 AL034379.1-201ENST00000423216 253 ntBASIC4.81□□□□□ -1.64
CCDC42Q96M95 RPS12P5-201ENST00000423449 371 ntBASIC4.81□□□□□ -1.64
CCDC42Q96M95 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC42Q96M95 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC42Q96M95 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC42Q96M95 AC008410.1-201ENST00000483777 339 ntBASIC4.81□□□□□ -1.64
CCDC42Q96M95 AC004815.1-201ENST00000484185 331 ntBASIC4.81□□□□□ -1.64
CCDC42Q96M95 MTND4LP2-201ENST00000502312 285 ntBASIC4.81□□□□□ -1.64
CCDC42Q96M95 AC112184.1-201ENST00000505179 312 ntBASIC4.81□□□□□ -1.64
CCDC42Q96M95 RPS27AP18-201ENST00000515536 459 ntBASIC4.81□□□□□ -1.64
CCDC42Q96M95 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
CCDC42Q96M95 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC42Q96M95 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC4.81□□□□□ -1.64
CCDC42Q96M95 HMGN2P6-201ENST00000551091 273 ntBASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 75 ms